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Sample GSM82286 Query DataSets for GSM82286
Status Public on Apr 30, 2007
Title 1988_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13999.5576 139.2659 G 152.9248 14076.5576 4634 15488.6533 158 14.18350601 92.04890243 78.1167 77 10.0326 124 139.2659
1002 1 948.4479 9.435 G 11.1328 1025.4479 1181 524.0994 96 11.05581284 92.11080023 77.2473 77 10.0739 188 9.435
1003 1 6.9828 0.0695 L 0.9229 84.9828 84 14.4503 58 8.59348011 92.0851795 79.025 78 9.3901 124 0.0695
1004 1 6.6897 0.0665 L 0.8664 83.6897 80 12.4155 29 6.076507568 96.59696301 78.8472 77 13.0646 150 0.0665
1005 1 5.5934 0.0556 L 0.8951 81.5934 79 12.5058 91 10.76405144 91.15790304 77.2686 76 10.1053 181 0.0556
1006 1 21.0256 0.2092 G 1.025 99.0256 98 11.9775 39 7.04672575 96.60711552 79.4011 78 12.4047 188 0.2092
1007 1 24.2143 0.2409 G 1.1011 101.2143 101 13.6129 56 8.444016457 91.92269177 77.8022 77 9.9485 188 0.2409
1008 1 17095.2754 170.0617 G 184.1297 17173.2754 8854 17688.3594 169 14.6689291 93.26727528 78.4063 78 10.1782 98 170.0617
1009 1 279.0333 2.7758 G 3.8444 357.0333 378 119.785 90 10.70474434 92.87104425 78.0184 78 9.914 169 2.7758
1010 1 686.0211 6.8245 G 8.8232 760.0211 841 400.7458 95 10.9980793 86.13844931 74.7093 74 8.0923 178 6.8245
1011 1 72.0779 0.717 G 1.661 148.0779 148 25.9429 77 9.90148735 89.1518675 76.489 76 8.7679 188 0.717
1012 1 25.4677 0.2533 G 1.124 102.4677 103 13.3836 62 8.884866714 91.16520686 77.9121 77 9.4435 188 0.2533
1013 1 23.1639 0.2304 G 1.1032 99.1639 99 10.8857 61 8.812923431 89.88426898 76.3462 76 9.2562 188 0.2304
1014 1 59.6479 0.5934 G 1.5204 135.6479 137 18.8419 71 9.507891655 89.21748708 75.4835 76 8.8117 188 0.5934
1015 1 14965.2715 148.8727 G 162.8734 15041.2715 8824 15629.6094 131 12.91489029 92.34945839 77.4153 76 10.8996 122 148.8727
1016 1 45.2188 0.4498 G 1.3806 121.2188 121 22.2447 64 9.027033806 87.80430607 76.3462 76 7.8695 188 0.4498
1017 1 18.0426 0.1795 G 1.0477 94.0426 95 10.8372 47 7.735777855 89.76186393 75.9451 76 9.1746 188 0.1795
1018 1 7.2973 0.0726 L 0.9457 84.2973 85 11.0279 37 6.86366272 89.14009453 77.2599 77 8.0934 183 0.0726
1019 1 13.7 0.1363 G 1.0115 90.7 91 10.0851 40 7.136496544 89.66616372 76.456 77 8.4441 188 0.1363
1020 1 27.2 0.2706 G 1.14 103.2 103 12.0196 45 7.569397449 90.52611546 77.0989 76 9.6841 188 0.2706

Total number of rows: 54359

Table truncated, full table size 5821 Kbytes.




Supplementary file Size Download File type/resource
GSM82286.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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