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Sample GSM82289 Query DataSets for GSM82289
Status Public on Apr 30, 2007
Title 2030_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 23029.7383 215.8035 G 181.7595 23137.7383 12191 23656.6465 147 13.68087006 127.2986418 109.575 108 12.8658 124 215.8035
1002 1 943.1702 8.8381 G 8.3898 1049.1702 1191 526.7051 94 10.94004154 125.053173 105.6264 106 12.7021 188 8.8381
1003 1 8.5663 0.0803 L 0.9058 117.5663 112 29.0609 83 10.28002357 129.7957543 109.6847 109 13.8638 211 0.0803
1004 1 16.4722 0.1544 L 0.9912 125.4722 127 13.2172 36 6.770275116 126.5824233 108.2911 109 11.7216 164 0.1544
1005 1 10.4824 0.0982 L 0.9379 116.4824 116 17.1537 85 10.40314198 124.1927691 106.0777 106 12.1285 214 0.0982
1006 1 39.0385 0.3658 G 1.1773 142.0385 141 19.1893 52 8.136857986 120.645603 103.9012 103 11.7637 168 0.3658
1007 1 22.0278 0.2064 G 1.015 128.0278 130 15.1428 36 6.770275116 126.1409812 106.2637 106 13.4273 188 0.2064
1008 1 23736.4531 222.4259 G 186.3682 23844.4531 10954 25010.8242 170 14.71226406 127.9427272 108.825 108 13.2952 124 222.4259
1009 1 739.0842 6.9257 G 6.6418 846.0842 886 345.1411 95 10.9980793 127.3870239 107.978 107 13.5913 188 6.9257
1010 1 673.2235 6.3085 G 6.2514 779.2235 891 319.0269 85 10.40314198 124.6475365 105.6257 106 12.4317 185 6.3085
1011 1 151.0732 1.4157 G 2.0347 258.0732 269 52.8564 82 10.21790791 126.834208 106.2637 107 13.2228 188 1.4157
1012 1 70.8548 0.664 G 1.4091 176.8548 175 22.0189 62 8.884866714 125.5073008 106.6744 106 13.0049 178 0.664
1013 1 42.0303 0.3939 G 1.1878 147.0303 144 19.9583 66 9.166996002 123.7824736 105.7733 105 12.5216 178 0.3939
1014 1 146.5897 1.3736 G 1.9959 254.5897 251 50.878 78 9.965575218 127.5588938 107.5879 108 13.0393 188 1.3736
1015 1 21783.127 204.122 G 171.9721 21890.127 9359 22893.168 135 13.1105814 127.2888336 107.1833 107 13.5259 124 204.122
1016 1 95.6308 0.8961 G 1.5583 203.6308 208 37.2483 65 9.097283363 130.6775633 109.1978 108 15.1184 188 0.8961
1017 1 68.3088 0.6401 G 1.4031 172.3088 170 27.7617 68 9.304853439 122.8073463 105.4011 104 12.5382 188 0.6401
1018 1 14.2703 0.1337 L 0.9473 118.2703 115 17.9212 37 6.86366272 124.8517342 105.2088 104 13.9012 188 0.1337
1019 1 19.2979 0.1808 L 0.9906 123.2979 121 26.0147 94 10.94004154 124.4663085 104.7727 104 13.6442 182 0.1808
1020 1 27.75 0.26 G 1.064 135.75 137 17.7622 52 8.136857986 127.5790821 108.8333 108 13.0527 168 0.26

Total number of rows: 54359

Table truncated, full table size 6016 Kbytes.




Supplementary file Size Download File type/resource
GSM82289.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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