NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82290 Query DataSets for GSM82290
Status Public on Apr 30, 2007
Title 2037_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 22952.9082 205.841 G 161.7296 23073.9082 16445 22270.0781 133 13.01310349 142.6696681 121.6833 121 14.4464 124 205.841
1002 1 857.092 7.6864 G 6.8138 979.092 1151 500.218 87 10.52482033 143.6933109 121.5824 122 14.4622 188 7.6864
1003 1 43.8431 0.3932 G 1.1343 166.8431 167 20.6458 51 8.058238983 147.0856149 124.8718 123 16.0571 162 0.3932
1004 1 38.5435 0.3457 G 1.1086 159.5435 154 21.3365 46 7.653039932 143.9190581 122.324 121 15.2794 185 0.3457
1005 1 11 0.0986 L 0.9291 127 128 18.7401 57 8.519076347 136.6933632 118.0973 116 13.7956 117 0.0986
1006 1 41.6327 0.3734 G 1.1456 158.6327 158 19.7584 49 7.898653984 138.4760639 119.044 117 14.3174 188 0.3734
1007 1 28.075 0.2518 G 1.0449 145.075 145 17.4304 40 7.136496544 138.8387298 116.8242 117 14.5592 188 0.2518
1008 1 24788.8047 222.3053 G 180.6922 24906.8047 11219 25790.9297 156 14.0934515 137.8410503 117.6417 118 13.2274 124 222.3053
1009 1 594.5294 5.3317 G 4.8722 716.5294 774 258.0983 85 10.40314198 147.0635371 122.6209 122 16.709 188 5.3317
1010 1 899.2325 8.0643 G 7.6229 1011.2325 1176 501.4994 86 10.46415806 132.6568894 112.7527 112 13.7713 188 8.0643
1011 1 151.7408 1.3608 G 1.912 265.7408 267 56.127 81 10.15541267 138.9831716 115.511 114 16.6554 188 1.3608
1012 1 130.0513 1.1663 G 1.7506 247.0513 255 57.189 78 9.965575218 141.1273636 118.967 117 16.0849 188 1.1663
1013 1 63.338 0.568 G 1.3197 175.338 174 18.932 71 9.507891655 132.8642913 112.5769 112 13.9095 188 0.568
1014 1 38.5333 0.3456 L 0.8833 156.5333 154 23.4261 30 6.18038702 177.2194313 122.2486 118 39.4796 187 0.3456
1015 1 22816.1699 204.6148 G 164.2398 22933.1699 9172 24347.5996 131 12.91489029 139.6322263 117.9615 117 15.0882 188 204.6148
1016 1 156.6753 1.4051 G 2.0052 269.6753 271 73.4671 77 9.90148735 134.484721 114.7747 113 14.3231 188 1.4051
1017 1 31.2558 0.2803 G 1.0621 145.2558 147 14.2128 43 7.39927721 136.762512 115.1167 114 15.175 186 0.2803
1018 1 7.1404 0.064 L 0.9132 118.1404 117 15.8008 57 8.519076347 129.3659164 111.55 111 12.2439 124 0.064
1019 1 16 0.1435 L 0.9619 127 131 16.4086 37 6.86366272 132.0240333 111.8506 111 14.016 180 0.1435
1020 1 39.0682 0.3504 G 1.1322 161.0682 162 18.003 44 7.484820843 142.2628127 119.4945 122 13.5085 188 0.3504

Total number of rows: 54359

Table truncated, full table size 6011 Kbytes.




Supplementary file Size Download File type/resource
GSM82290.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap