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Sample GSM82291 Query DataSets for GSM82291
Status Public on Apr 30, 2007
Title 2030_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 20437.3418 157.505 G 124.8136 20568.3418 9922 21228.6895 157 14.13855076 164.7924143 133.2917 131 22.5283 124 157.505
1002 1 1052.9081 8.1145 G 6.5592 1189.9081 1350 501.216 87 10.52482033 181.4101071 141.8954 137 29.6067 178 8.1145
1003 1 6.6548 0.0513 L 0.7696 144.6548 136 43.0701 84 10.34176636 187.9578509 143.1642 138 33.3052 215 0.0513
1004 1 11.9545 0.0921 L 0.7801 149.9545 145 39.4729 88 10.58513451 192.2249211 143.7337 138 36.1499 207 0.0921
1005 1 28.6522 0.2208 L 0.9028 160.6522 141 71.0633 92 10.82303238 177.9557852 138.9078 132 30.6372 214 0.2208
1006 1 65.8125 0.5072 G 1.2523 195.8125 173 90.7746 48 7.817640305 156.3572596 131.1227 130 17.5715 169 0.5072
1007 1 2.12 0.0163 L 0.6515 135.12 137 22.8505 50 7.978845596 207.3939253 142.9917 133 49.596 124 0.0163
1008 1 22339.7793 172.1666 G 133.5024 22473.7793 12458 22880.9004 169 14.6689291 168.3398568 136.2845 134 22.8932 120 172.1666
1009 1 832.7238 6.4176 G 6.216 962.7238 1002 434.0969 107 11.67204475 154.8783468 130.0385 130 16.5856 188 6.4176
1010 1 726.9773 5.6026 G 5.4983 854.9773 922 353.5176 88 10.58513451 155.4995167 130.9355 128 18.333 161 5.6026
1011 1 163.7083 1.2617 G 1.5595 297.7083 300 57.2013 72 9.574614525 190.8983671 143.8253 134 37.9322 172 1.2617
1012 1 125.6053 0.968 G 1.5818 253.6053 256 43.7123 76 9.836981773 160.3300966 131.978 128 21.5534 188 0.968
1013 1 56.9155 0.4386 G 1.1512 185.9155 180 25.845 71 9.507891655 161.4930591 132.6978 129 21.662 188 0.4386
1014 1 151.446 1.1672 G 1.5164 285.446 295 44.6201 74 9.706685066 188.2351828 143.44 134 36.1568 156 1.1672
1015 1 19190.2422 147.894 G 124.2409 19317.2422 9398 20356.6934 147 13.68087006 155.48219 129.4667 127 18.9881 124 147.894
1016 1 87.5313 0.6746 G 1.3146 216.5313 213 56.1975 64 9.027033806 164.7103214 134.6605 129 23.8069 168 0.6746
1017 1 45.5625 0.3511 G 1.093 173.5625 170 26.4172 80 10.09253025 158.7893466 130.2264 128 20.5262 110 0.3511
1018 1 29.9615 0.2309 L 0.7929 158.9615 139 100.8622 52 8.136857986 200.4875247 140.9914 129 47.6584 120 0.2309
1019 1 52.3954 0.4038 G 1.2 181.3954 141 103.5004 43 7.39927721 151.1597717 130.8524 129 14.7732 155 0.4038
1020 1 89.3902 0.6889 G 1.363 224.3902 143 176.904 41 7.225152016 164.6251615 136.4636 135 19.7501 114 0.6889

Total number of rows: 54359

Table truncated, full table size 6022 Kbytes.




Supplementary file Size Download File type/resource
GSM82291.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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