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Sample GSM82294 Query DataSets for GSM82294
Status Public on Apr 30, 2007
Title 1988_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14865.4902 181.8409 G 165.7697 14942.4902 5596 16077.2998 149 13.77362347 90.14005766 76.8583 77 8.76 124 181.8409
1002 1 733.1494 8.9682 G 9.0895 810.1494 939 403.2741 87 10.52482033 89.13048969 77.4341 77 8.087 188 8.9682
1003 1 9.4359 0.1154 L 0.9638 84.4359 88 10.0557 39 7.04672575 87.60281066 74.956 75 8.4019 188 0.1154
1004 1 13.125 0.1606 L 0.9952 88.125 91 11.4303 48 7.817640305 88.54647304 75.3851 75 9.031 180 0.1606
1005 1 14.8947 0.1822 G 1.0321 89.8947 90 7.0554 38 6.955796242 87.10024516 74.9066 75 8.0668 188 0.1822
1006 1 26.96 0.3298 G 1.1446 102.96 97 25.4023 50 7.978845596 89.95189102 76.0549 76 9.3013 188 0.3298
1007 1 19.9756 0.2443 G 1.0659 95.9756 96 10.045 41 7.225152016 90.04059479 76.2308 76 9.3604 188 0.2443
1008 1 16654.3164 203.7225 G 182.9382 16731.3164 9806 16898.8594 160 14.27299309 91.45885891 77.7917 77 9.6392 124 203.7225
1009 1 308.2558 3.7707 G 4.3657 383.2558 415 125.6791 86 10.46415806 87.78785318 76.1538 75 8.5252 188 3.7707
1010 1 519.6111 6.3561 G 6.7268 595.6111 678 261.7135 90 10.70474434 88.54348217 77.3149 76 8.3623 187 6.3561
1011 1 102.5119 1.254 G 2.046 177.5119 184 41.1239 84 10.34176636 86.76201716 76.1154 75 7.8413 188 1.254
1012 1 46.4545 0.5683 G 1.3804 120.4545 120 19.0758 66 9.166996002 87.25816318 74.9505 74 8.8388 188 0.5683
1013 1 30.871 0.3776 G 1.1922 106.871 106 13.706 62 8.884866714 89.64349771 76.0608 76 9.0957 187 0.3776
1014 1 59.9697 0.7336 G 1.342 139.9697 130 35.4508 66 9.166996002 104.3018922 82.3956 80 16.2013 188 0.7336
1015 1 15180.7441 185.6972 G 153.912 15264.7441 8275 15927.498 131 12.91489029 99.17839674 83.7967 84 10.1189 188 185.6972
1016 1 38.7255 0.4737 I 1.2431 124.7255 120 18.0197 51 8.058238983 100.3320946 85.6099 86 9.5547 188 0.4737
1017 1 15.375 0.1881 G 1.0133 98.375 98 10.6834 40 7.136496544 97.08009082 83.4058 83 9.3867 142 0.1881
1018 1 2.9474 0.0361 L 0.8607 85.9474 88 11.235 57 8.519076347 99.85562777 83.1316 83 11.2371 78 0.0361
1019 1 75.5517 0.9242 C 1.2672 174.5517 160 65.8518 87 10.52482033 137.748395 107.1667 99 25.8323 86 0.9242
1020 1 11.2105 0.1371 CL 0.9324 139.2105 140 15.8299 38 6.955796242 149.303058 129.61 128 14.202 104 0.1371

Total number of rows: 54359

Table truncated, full table size 5806 Kbytes.




Supplementary file Size Download File type/resource
GSM82294.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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