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Sample GSM82295 Query DataSets for GSM82295
Status Public on Apr 30, 2007
Title 1842_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11601.8643 125.4599 G 121.5304 11682.8643 7642 11159.7559 186 15.38903999 96.13117011 82.7083 81 10.0874 124 125.4599
1002 1 672.2679 7.2698 G 7.7778 754.2679 835 368.0713 114 12.04779243 96.97745518 81.8559 82 9.985 122 7.2698
1003 1 6.7297 0.0728 L 0.9234 89.7297 91 13.0956 37 6.86366272 97.16804139 83.6707 83 9.4454 173 0.0728
1004 1 7.7879 0.0842 L 0.9209 85.7879 84 10.8705 33 6.482044697 93.15356287 78.9505 78 10.1024 188 0.0842
1005 1 12 0.1298 L 0.973 92 92 12.216 39 7.04672575 94.55520644 80.7857 80 9.7035 188 0.1298
1006 1 16.9767 0.1836 G 1.0399 95.9767 96 12.0493 43 7.39927721 92.29373551 79.5028 79 8.8625 183 0.1836
1007 1 40.2564 0.4353 G 1.2891 119.2564 120 15.1213 78 9.965575218 92.5107431 78.511 79 9.0072 188 0.4353
1008 1 9931.8975 107.4013 G 105.7559 10012.8975 4714 10090.7813 188 15.47155571 94.67933626 81.3167 81 9.1196 124 107.4013
1009 1 201.9663 2.184 G 3.071 279.9663 292 80.5649 89 10.64510822 91.16489011 78.9341 78 8.7766 188 2.184
1010 1 371.9036 4.0217 G 4.7391 452.9036 497 187.6006 83 10.28002357 95.56814578 80.4382 81 9.7121 184 4.0217
1011 1 214.0112 2.3143 G 3.198 292.0112 294 91.1172 89 10.64510822 91.31143768 78.1648 78 8.8743 188 2.3143
1012 1 27.9394 0.3021 G 1.1596 102.9394 102 13.0452 66 9.166996002 88.7697216 77.5549 75 9.1798 188 0.3021
1013 1 17.7936 0.1924 G 1.0615 95.7936 95 11.0599 63 8.956232071 90.2396027 77.7308 78 8.1597 188 0.1924
1014 1 19.3333 0.2091 G 1.0687 97.3333 98 9.0331 48 7.817640305 91.08063852 78.0604 78 8.7204 188 0.2091
1015 1 9457.6934 102.2733 G 100.0828 9538.6934 4889 9368.0566 175 14.92705345 95.30798776 80.675 81 9.5387 124 102.2733
1016 1 47.3385 0.5119 G 1.2198 127.3385 127 14.8927 65 9.097283363 104.389812 80.6429 80 16.2599 188 0.5119
1017 1 38.0533 0.4115 G 1.2632 115.0533 113 17.7027 75 9.772049904 91.07814516 77.6389 77 9.3854 186 0.4115
1018 1 15.6667 0.1694 G 1.0253 94.6667 90 27.6127 93 10.88169479 92.32741032 79.6114 79 8.8849 201 0.1694
1019 1 40.0732 0.4333 G 1.2805 120.0732 115 27.4327 41 7.225152016 93.76711182 79.456 80 9.1781 188 0.4333
1020 1 32.6418 0.353 G 1.196 111.6418 108 17.4507 67 9.236181259 93.3423998 79.2198 79 9.5616 188 0.353

Total number of rows: 54359

Table truncated, full table size 5824 Kbytes.




Supplementary file Size Download File type/resource
GSM82295.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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