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Sample GSM82299 Query DataSets for GSM82299
Status Public on Sep 28, 2010
Title 1995_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12179.4238 115.7194 G 127.9505 12261.4238 8117 11492.8213 200 15.95769119 95.82944947 82.3023 82 9.2196 223
1002 1 1040.775 9.8886 G 11.5386 1124.775 1161 575.7542 122 12.46335506 97.47963879 82.9739 84 8.9864 119
1003 1 4.9175 0.0467 L 0.8851 86.9175 84 12.3894 97 11.11324596 98.20179573 82.0278 82 10.8012 150
1004 1 6.7 0.0637 L 0.9272 87.7 87 13.0217 90 10.70474434 94.58433669 81.6059 81 9.0562 176
1005 1 6.2727 0.0596 L 0.9134 85.2727 84 19.5301 88 10.58513451 93.35664615 79.3989 79 9.5711 189
1006 1 24.1867 0.2298 G 1.1052 103.1867 103 11.311 75 9.772049904 93.36663093 79.3086 79 9.5778 181
1007 1 21.4271 0.2036 G 1.0964 100.4271 100 13.9379 96 11.05581284 91.59454197 78.5333 79 8.3964 124
1008 1 12197.1221 115.8875 G 131.0096 12277.1221 7001 11522.2988 209 16.31278801 93.71164509 80.0536 80 9.1411 232
1009 1 196.34 1.8655 G 3.0009 275.34 277 69.2805 102 11.39607143 91.75179418 79.5414 79 8.5012 187
1010 1 479.6454 4.5572 G 6.1271 557.6454 612 264.0338 112 11.94164276 91.01227739 78.2167 78 8.6749 124
1011 1 50.6 0.4808 G 1.3726 130.6 134 22.9394 80 10.09253025 95.14666226 79.7706 80 10.0978 176
1012 1 38.25 0.3634 G 1.2737 118.25 117 18.6436 76 9.836981773 92.8409487 79.9176 80 8.5606 188
1013 1 34.7838 0.3305 G 1.2277 111.7838 112 14.8272 74 9.706685066 91.0536733 77.8066 77 9.3691 187
1014 1 14.9545 0.1421 G 1.0175 92.9545 91 11.1965 44 7.484820843 91.35690515 78.2857 78 8.9046 188
1015 1 11753.2188 111.6699 G 128.5942 11831.2188 6701 11380.2158 214 16.50676346 92.00428974 79.193 78 9.3362 236
1016 1 48.5679 0.4615 G 1.3664 128.5679 128 18.5399 81 10.15541267 94.09307391 80.1703 80 9.3954 188
1017 1 51.05 0.485 G 1.41 128.05 125 19.5071 102 11.39607143 90.81493149 77.7083 77 9.21 124
1018 1 5.6552 0.0537 L 0.9135 83.6552 82 11.6863 87 10.52482033 91.57735698 78.8268 78 9.0516 185
1019 1 7.8667 0.0747 L 0.9205 88.8667 88 12.3551 60 8.740387917 96.54654007 81.2672 81 10.3644 120
1020 1 22.1967 0.2109 G 1.0853 102.1967 102 12.3975 61 8.812923431 94.16218899 80.8462 80 9.4415 188

Total number of rows: 54359

Table truncated, full table size 5470 Kbytes.




Supplementary file Size Download File type/resource
GSM82299.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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