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Sample GSM82300 Query DataSets for GSM82300
Status Public on Sep 28, 2010
Title 1995_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 14930.502 151.7107 G 157.9591 15011.502 10203 13778.4727 231 17.14987946 95.0341303 81.7882 81 9.3561 211
1002 1 1140.0146 11.5838 G 12.5573 1222.0146 1328 592.9246 138 13.25545406 97.31499385 83.1207 82 10.21 120
1003 1 0.0286 0.0003 L 0.8416 84.0286 83 10.9479 35 6.675580978 99.84872909 84.9006 84 10.5658 187
1004 1 1.9753 0.0201 L 0.7121 84.9753 84 10.5806 81 10.15541267 119.3297735 86.9314 83 24.2198 181
1005 1 5.382 0.0547 L 0.9177 85.382 84 10.6608 89 10.64510822 93.03925585 80.442 80 8.6928 142
1006 1 26.2073 0.2663 G 1.1257 106.2073 106 13.2561 82 10.21790791 94.34763602 80.8661 80 9.5651 116
1007 1 23.2809 0.2366 G 1.0755 104.2809 104 12.938 89 10.64510822 96.95624037 81.661 81 10.6375 122
1008 1 14818.4111 150.5718 G 154.0287 14901.4111 11821 13869.167 230 17.11271667 96.74439837 82.7306 83 9.1629 227
1009 1 188.5966 1.9164 G 2.8635 269.5966 267 68.8982 121 12.41217041 94.14942726 82.6555 81 8.7663 123
1010 1 500.2373 5.083 G 6.0539 582.2373 629 221.5413 120 12.36077404 96.17611513 83.7212 82 9.4507 108
1011 1 49.7379 0.5054 G 1.3853 129.7379 130 18.2682 105 11.56244564 93.65279576 80.292 80 9.1019 117
1012 1 35.0769 0.3564 G 1.2171 116.0769 118 17.3233 78 9.965575218 95.37539798 80.4888 81 9.5836 184
1013 1 33.3723 0.3391 G 1.2045 114.3723 112 13.9962 94 10.94004154 94.95463831 81.05 81 9.3031 124
1014 1 19.1029 0.1941 G 1.0548 100.1029 99 10.5637 68 9.304853439 94.90537281 81.3094 81 9.2702 187
1015 1 14688.8574 149.2553 G 151.4036 14772.8574 12966 13268.0273 228 17.03815269 97.57270898 84.1429 84 9.0485 218
1016 1 41.8812 0.4256 G 1.2679 124.8812 123 16.0724 103 11.45179749 98.49471309 83.8034 83 10.3298 121
1017 1 58.2549 0.5919 G 1.4427 140.2549 136 19.7572 104 11.5072546 97.21789094 82.0833 82 10.1453 124
1018 1 1.9231 0.0195 L 0.862 83.9231 82 11.1508 52 8.136857986 97.36293932 82.7412 82 10.242 87
1019 1 10.1875 0.1035 L 0.9608 91.1875 91 12.4296 64 9.027033806 94.91099299 80.7117 81 9.274 115
1020 1 21.2195 0.2156 G 1.0719 104.2195 104 14.4847 82 10.21790791 97.22900173 82.9182 83 9.486 114

Total number of rows: 54359

Table truncated, full table size 5475 Kbytes.




Supplementary file Size Download File type/resource
GSM82300.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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