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Sample GSM82309 Query DataSets for GSM82309
Status Public on Apr 30, 2007
Title 2314_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10875.7471 86.6951 G 122.9644 10951.7471 5298 10968.9697 206 16.1952877 89.06438772 76.2762 76 8.7096 218 86.6951
1002 1 824.5739 6.573 G 10.0278 899.5739 980 484.7011 117 12.20528698 89.70790425 76.5641 75 9.8053 121 6.573
1003 1 16 0.1275 L 0.9518 97 83 52.6826 59 8.667244911 101.9119634 81.6667 81 13.9413 89 0.1275
1004 1 5.4405 0.0434 L 0.8991 84.4405 83 10.9374 84 10.34176636 93.92103128 78.7184 79 9.9474 214 0.0434
1005 1 11.6136 0.0926 L 0.9783 88.6136 90 11.7825 44 7.484820843 90.57974074 77.2514 77 9.0532 181 0.0926
1006 1 24.9048 0.1985 G 1.1268 100.9048 102 11.6056 63 8.956232071 89.55123016 76.5278 76 9.0342 186 0.1985
1007 1 34.6667 0.2763 G 1.2138 111.6667 109 17.5146 78 9.965575218 91.99737697 77.8132 77 9.9983 188 0.2763
1008 1 10989.1162 87.5988 G 118.0954 11068.1162 5507 11083.6592 202 16.03728104 93.72184309 79.2611 79 9.8146 234 87.5988
1009 1 581.4636 4.6351 G 6.9023 659.4636 723 299.0756 112 11.94164276 95.54300147 80.05 78 11.6953 124 4.6351
1010 1 481.011 3.8343 G 5.9632 560.011 532 249.4982 91 10.76405144 93.91189478 78.5604 79 9.9413 188 3.8343
1011 1 84.5281 0.6738 G 1.8207 159.5281 156 34.374 89 10.64510822 87.61713351 75.4034 75 8.4114 182 0.6738
1012 1 52.1487 0.4157 G 1.4247 126.1487 127 20.7792 74 9.706685066 88.54379385 75.2253 74 9.6959 188 0.4157
1013 1 30.7222 0.2449 G 1.1995 105.7222 103 23.4635 72 9.574614525 88.1383942 76.4396 75 8.7589 188 0.2449
1014 1 75.7654 0.604 G 1.6572 152.7654 153 26.3665 81 10.15541267 92.18503082 77.6429 77 10.1234 188 0.604
1015 1 10527.751 83.9211 G 113.8099 10606.751 5842 10546.8369 205 16.15593147 93.19708679 79.0482 79 9.4647 236 83.9211
1016 1 31.5063 0.2511 G 1.2049 107.5063 107 11.3649 79 10.02925301 89.22333137 76.4294 76 8.8156 183 0.2511
1017 1 47.5309 0.3789 G 1.3803 123.5309 122 19.0212 81 10.15541267 89.49627644 76.7527 76 8.9975 188 0.3789
1018 1 14.9608 0.1193 G 1.0256 89.9608 90 14.4181 51 8.058238983 87.71479843 75.8516 75 8.4765 188 0.1193
1019 1 13.2088 0.1053 L 0.9987 86.2088 82 21.9202 91 10.76405144 86.32238971 74.2308 73 8.8816 162 0.1053
1020 1 31.1667 0.2484 G 1.16 108.1667 110 17.1189 72 9.574614525 93.24922558 78.0414 77 10.8328 149 0.2484

Total number of rows: 54359

Table truncated, full table size 5847 Kbytes.




Supplementary file Size Download File type/resource
GSM82309.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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