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Sample GSM82312 Query DataSets for GSM82312
Status Public on Apr 30, 2007
Title 1990_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11554.0732 92.2849 G 119.0138 11638.0732 7089 11093.5068 180 15.1387949 97.78762478 84.0583 84 9.1917 124 92.2849
1002 1 1059.2788 8.4607 G 11.256 1144.2788 1222 555.826 106 11.61737442 101.6591129 85.9602 85 11.1061 182 8.4607
1003 1 -1.9412 -0.0155 L 0.8147 85.0588 84 11.8554 85 10.40314198 104.4023189 87.8982 87 11.6015 234 -0.0155
1004 1 7.7778 0.0621 L 0.9258 94.7778 95 15.3154 36 6.770275116 102.3785744 87.5824 87 10.2524 188 0.0621
1005 1 11.9474 0.0954 L 0.9824 94.9474 94 9.9788 38 6.955796242 96.65126134 83.9011 83 9.1008 188 0.0954
1006 1 31.7302 0.2534 G 1.1931 114.7302 113 12.7145 63 8.956232071 96.16392023 83.5116 83 8.776 178 0.2534
1007 1 53.375 0.4263 G 1.4036 136.375 138 19.5239 80 10.09253025 97.16038674 84.2912 83 9.4403 188 0.4263
1008 1 13028.8828 104.0646 G 129.0129 13114.8828 11962 11668.0195 172 14.79855442 101.6556097 85.7759 86 10.4371 120 104.0646
1009 1 543.5316 4.3413 G 6.2495 627.5316 713 289.7426 113 11.9948349 100.4133839 84.3866 84 10.9423 123 4.3413
1010 1 557.9053 4.4561 G 6.5471 640.9053 709 288.7277 95 10.9980793 97.89084621 84.4889 83 9.9272 186 4.4561
1011 1 79.7529 0.637 G 1.6782 161.7529 161 28.3183 85 10.40314198 96.38409923 82.5879 82 9.5894 188 0.637
1012 1 47.2388 0.3773 G 1.3044 131.2388 133 16.2298 67 9.236181259 100.6147914 84.5055 84 11.0765 188 0.3773
1013 1 23.9538 0.1913 G 1.0988 106.9538 107 12.2944 65 9.097283363 97.33988852 82.5275 83 9.5599 188 0.1913
1014 1 14.881 0.1189 L 0.9945 95.881 98 13.2165 42 7.312732697 96.41020898 81.8352 81 10.2735 188 0.1189
1015 1 11348.1475 90.6402 G 117.5891 11432.1475 6836 11483.8076 199 15.91774654 97.22118421 83.7818 84 8.8141 228 90.6402
1016 1 262.0645 2.0932 G 3.5368 346.0645 348 96.6779 93 10.88169479 97.84673619 84.8895 84 9.2312 187 2.0932
1017 1 48.8519 0.3902 G 1.3763 131.8519 132 18.166 81 10.15541267 95.80211324 82.7802 83 8.5347 188 0.3902
1018 1 18.24 0.1457 G 1.0504 101.24 103 10.4126 50 7.978845596 96.38398945 83.5989 83 8.9227 188 0.1457
1019 1 16 0.1278 L 0.9942 103 105 14.1051 44 7.484820843 103.5996625 86.6209 87 11.0664 188 0.1278
1020 1 51 0.4073 G 1.3199 137 139 18.6414 76 9.836981773 103.796208 86.978 86 11.8641 188 0.4073

Total number of rows: 54359

Table truncated, full table size 5849 Kbytes.




Supplementary file Size Download File type/resource
GSM82312.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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