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Sample GSM82315 Query DataSets for GSM82315
Status Public on Apr 30, 2007
Title 445_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 9322.7617 84.5181 G 96.1784 9406.7617 7003 8734.7178 191 15.59451008 97.80537148 83.8125 84 9.2036 232 84.5181
1002 1 658.4396 5.9693 G 7.3368 743.4396 788 352.0253 118 12.25733566 101.3307825 85.4153 85 10.8872 122 5.9693
1003 1 11.4412 0.1037 L 0.9274 100.4412 100 10.6611 34 6.579524517 108.2999944 89.3699 89 12.8667 179 0.1037
1004 1 20.5625 0.1864 G 1.0437 110.5625 109 18.5718 48 7.817640305 105.9347329 90.5549 90 10.6232 188 0.1864
1005 1 2.931 0.0266 L 0.8824 93.931 93 8.4606 29 6.076507568 106.45373 91.3023 91 10.3025 178 0.0266
1006 1 16.2885 0.1477 L 0.9966 107.2885 110 12.2856 52 8.136857986 107.6570635 92.3631 91 11.1047 174 0.1477
1007 1 15.2642 0.1384 L 0.9861 109.2642 105 18.282 53 8.214724541 110.8087513 93.6961 94 11.2058 187 0.1384
1008 1 9899.7373 89.7489 G 90.2608 9992.7373 7909 9044.1875 185 15.3476162 110.7095426 93.8142 93 11.8064 234 89.7489
1009 1 249.5757 2.2626 G 3.1578 339.5757 350 94.0762 101 11.34007072 107.5368863 91.6923 90 11.6913 188 2.2626
1010 1 381.0211 3.4543 G 4.6777 466.0211 510 175.4689 95 10.9980793 99.62648536 85.3407 85 9.751 188 3.4543
1011 1 61.4217 0.5568 G 1.4713 146.4217 147 24.2612 83 10.28002357 99.51676082 84.3297 85 9.6778 188 0.5568
1012 1 42.2973 0.3835 G 1.2862 128.2973 129 16.8737 74 9.706685066 99.75289466 85.489 86 9.1686 188 0.3835
1013 1 15.3778 0.1394 L 0.9834 98.3778 100 11.0901 45 7.569397449 100.0376521 84.0495 83 11.3584 188 0.1394
1014 1 10.2632 0.093 L 0.9583 94.2632 95 11.0541 38 6.955796242 98.3633352 84.2692 84 9.5756 188 0.093
1015 1 9607.9258 87.1034 G 94.0879 9695.9258 8549 8877.9141 190 15.55363369 103.0517674 88.3465 88 10.0345 236 87.1034
1016 1 40.7975 0.3699 G 1.2501 129.7975 128 14.7162 79 10.02925301 103.8330843 88.7802 89 9.8887 188 0.3699
1017 1 30.3571 0.2752 G 1.0415 117.3571 117 13.2464 42 7.312732697 112.6812213 89.8077 87 17.1208 188 0.2752
1018 1 4.5 0.0408 L 0.8743 98.5 98 10.5 30 6.18038702 112.6622333 94.8222 94 12.4415 186 0.0408
1019 1 7.7924 0.0706 L 0.8826 119.7924 119 16.3584 53 8.214724541 135.722033 111.7778 112 15.8147 121 0.0706
1020 1 29.2941 0.2656 C 1.0004 154.2941 155 18.8989 104 11.5072546 154.2373723 126.8657 125 19.4916 224 0.2656

Total number of rows: 54359

Table truncated, full table size 5844 Kbytes.




Supplementary file Size Download File type/resource
GSM82315.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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