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Sample GSM82317 Query DataSets for GSM82317
Status Public on Apr 30, 2007
Title 1581_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11344.0752 114.964 G 101.7592 11430.0752 7675 10907.7129 175 14.92705345 112.3246919 89.2047 86 17.5498 223 114.964
1002 1 852.6346 8.6408 C 8.4892 943.6346 1022 478.9982 106 11.61737442 111.1574671 91.6864 91 13.4383 122 8.6408
1003 1 5.0115 0.0508 CL 0.8332 98.0115 93 16.9953 87 10.52482033 117.6345316 95.0098 93 16.423 212 0.0508
1004 1 5.7931 0.0587 CL 0.5287 96.7931 90 19.4198 29 6.076507568 183.0889768 103.9181 91 61.3927 177 0.0587
1005 1 21.5 0.2179 G 1.044 103.5 92 41.7642 30 6.18038702 99.13569822 82.1374 82 11.4238 188 0.2179
1006 1 17.8125 0.1805 G 1.0271 96.8125 98 12.7486 64 9.027033806 94.25645647 80.2636 79 10.171 114 0.1805
1007 1 38.3924 0.3891 G 1.2725 117.3924 117 16.6562 79 10.02925301 92.2545688 79.7418 79 8.8364 188 0.3891
1008 1 10938.4873 110.8537 G 117.1146 11018.4873 6033 11283.083 195 15.75695801 94.08293895 80.9071 80 9.3886 234 110.8537
1009 1 591.3939 5.9934 G 7.2716 670.3939 719 303.8973 99 11.22723103 92.19285247 79.2778 79 8.7952 186 5.9934
1010 1 805.9375 8.1676 G 9.5678 884.9375 911 472.6882 96 11.05581284 92.49122473 78.6209 79 8.9942 188 8.1676
1011 1 56.8077 0.5757 G 1.4816 133.8077 135 22.9453 78 9.965575218 90.31141023 78.1484 77 8.8743 188 0.5757
1012 1 78.4189 0.7947 G 1.7019 155.4189 156 30.1312 74 9.706685066 91.3225982 77.467 77 9.5484 188 0.7947
1013 1 28.662 0.2905 G 1.1675 105.662 105 14.4046 71 9.507891655 90.49912677 77.1264 77 8.9994 188 0.2905
1014 1 128.837 1.3057 G 2.2289 208.837 210 46.4506 92 10.82303238 93.69586182 80.2582 80 9.1306 188 1.3057
1015 1 11471.0752 116.2511 G 126.4007 11550.0752 7517 11376.3984 188 15.47155571 91.37666866 78.55 79 8.2511 124 116.2511
1016 1 116.369 1.1793 G 2.0818 197.369 199 45.5356 84 10.34176636 94.80844229 81.2637 81 9.2056 188 1.1793
1017 1 43.5069 0.4409 G 1.3254 123.5069 114 39.3461 73 9.640875816 93.18747866 81.1557 80 8.7917 173 0.4409
1018 1 13.4103 0.1359 L 0.9701 94.4103 93 13.8021 39 7.04672575 97.31521974 81.5222 81 10.8768 186 0.1359
1019 1 8.8548 0.0897 L 0.9395 90.8548 89 11.9621 62 8.884866714 96.70835667 81.7193 82 9.8056 118 0.0897
1020 1 39.6329 0.4017 G 1.2306 126.6329 124 17.1185 79 10.02925301 102.9064105 87.4286 87 10.6043 181 0.4017

Total number of rows: 54359

Table truncated, full table size 5826 Kbytes.




Supplementary file Size Download File type/resource
GSM82317.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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