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Sample GSM82324 Query DataSets for GSM82324
Status Public on Apr 30, 2007
Title 1842_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18351.5859 287.7305 G 187.0318 18430.5859 9460 19007.1523 164 14.45030403 98.54250183 79.75 79 13.0283 124 287.7305
1002 1 648.0833 10.1612 G 7.9559 723.0833 833 341.1909 96 11.05581284 90.88590041 76.0167 75 10.5906 186 10.1612
1003 1 6.3059 0.0989 L 0.917 82.3059 82 12.8164 85 10.40314198 89.75472544 75.7056 76 9.1698 186 0.0989
1004 1 15.9388 0.2499 G 1.0335 92.9388 95 13.2286 49 7.898653984 89.92410165 77.4615 77 8.6161 175 0.2499
1005 1 5.5429 0.0869 L 0.8843 79.5429 78 11.5198 35 6.675580978 89.95472954 74.0495 74 10.6365 188 0.0869
1006 1 21.3 0.334 G 1.0749 94.3 96 12.8339 40 7.136496544 87.73112487 74.0773 73 9.8207 187 0.334
1007 1 27.8983 0.4374 G 1.1346 101.8983 99 14.7587 59 8.667244911 89.81008112 74.6593 74 10.5401 188 0.4374
1008 1 17362.7402 272.2266 G 179.8828 17439.7402 5950 18676.3691 152 13.91159248 96.95054816 77.3167 77 13.3004 124 272.2266
1009 1 168.35 2.6395 G 2.7614 241.35 253 75.9497 80 10.09253025 87.40067945 73.8063 73 9.6005 166 2.6395
1010 1 379.8452 5.9555 G 4.9895 454.8452 514 222.6128 84 10.34176636 91.15972732 75.6807 75 10.7731 172 5.9555
1011 1 86.4444 1.3553 G 1.8144 161.4444 166 33.6782 72 9.574614525 88.97809072 75.2143 75 9.3187 188 1.3553
1012 1 21.2 0.3324 G 1.0798 95.2 97 14.111 50 7.978845596 88.16379969 74.6744 74 9.4425 178 0.3324
1013 1 65.7931 1.0316 G 1.5656 140.7931 101 143.705 118 12.25733566 89.92786526 75.8882 75 9.9519 176 1.0316
1014 1 6.4105 0.1005 L 0.9113 81.4105 80 14.9951 95 10.9980793 89.3383448 75.4106 75 9.5589 215 0.1005
1015 1 18082.9688 283.5189 G 186.4401 18162.9688 7381 19700.3516 163 14.40618038 97.41987277 80.9135 80 11.6132 108 283.5189
1016 1 31.625 0.4958 G 1.1968 105.625 102 15.0173 56 8.444016457 88.25662318 75.3077 74 9.5044 188 0.4958
1017 1 23.7727 0.3727 G 1.0917 98.7727 98 10.1374 44 7.484820843 90.47442578 76.2033 75 10.3163 188 0.3727
1018 1 9.9643 0.1562 L 0.938 83.9643 83 12.5099 56 8.444016457 89.51380446 75.8482 74 10.3425 116 0.1562
1019 1 7.2889 0.1143 L 0.878 85.2889 82 19.541 90 10.70474434 97.13678826 79.5741 78 12.7579 168 0.1143
1020 1 28.6341 0.4489 G 1.0196 108.6341 108 14.0205 41 7.225152016 106.5434413 82.3389 80 17.6956 186 0.4489

Total number of rows: 54359

Table truncated, full table size 5821 Kbytes.




Supplementary file Size Download File type/resource
GSM82324.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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