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Sample GSM82330 Query DataSets for GSM82330
Status Public on Apr 30, 2007
Title 1252_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17463.8789 219.9288 G 168.056 17550.8789 6876 19120.9551 158 14.18350601 104.4347248 88.05 87 11.6231 124 219.9288
1002 1 773.2553 9.7379 G 7.588 860.2553 960 395.5924 94 10.94004154 113.3702262 88.7209 87 17.5801 178 9.7379
1003 1 63.4545 0.7991 G 1.4421 150.4545 110 105.044 44 7.484820843 104.33193 87.6722 87 11.5546 186 0.7991
1004 1 -1.5806 -0.0199 L 0.8036 87.4194 86 12.3099 31 6.282549381 108.7812428 89.3667 89 13.1875 186 -0.0199
1005 1 25.1591 0.3168 G 1.0959 110.1591 101 45.5412 44 7.484820843 100.5189878 85.2198 85 10.346 188 0.3168
1006 1 8.9355 0.1125 L 0.904 93.9355 91 13.2298 31 6.282549381 103.9162749 85.3481 85 12.6109 187 0.1125
1007 1 22.4146 0.2823 G 1.019 110.4146 110 22.8676 41 7.225152016 108.3528252 87.9944 88 13.5685 186 0.2823
1008 1 20062.1016 252.6491 G 176.8103 20151.1016 11186 20358.5391 150 13.81976604 113.9702069 91.2119 89 16.6468 122 252.6491
1009 1 764.9596 9.6334 G 8.0052 851.9596 933 394.4158 101 11.34007072 106.4258182 89 87 12.9505 131 9.6334
1010 1 824 10.3769 G 8.7085 910 1041 461.7738 90 10.70474434 104.4958263 87.3168 86 12.3306 167 10.3769
1011 1 86.3544 1.0875 G 1.6816 170.3544 172 34.3604 79 10.02925301 101.3078692 86.3576 84 11.5386 171 1.0875
1012 1 45.8033 0.5768 G 1.2543 131.8033 129 15.46 61 8.812923431 105.0845936 86.7967 86 12.7231 188 0.5768
1013 1 36.5294 0.46 G 1.1861 122.5294 123 17.0065 68 9.304853439 103.3079512 86.6484 86 11.5386 188 0.46
1014 1 5.8667 0.0739 L 0.9047 91.8667 90 12.8912 30 6.18038702 101.5487986 86.1864 86 10.3659 183 0.0739
1015 1 20178.4863 254.1148 G 187.2984 20268.4863 9056 21164.8242 175 14.92705345 108.2149548 89.9167 90 12.1433 124 254.1148
1016 1 62.3 0.7846 G 1.4009 148.3 146 25.399 80 10.09253025 105.8636729 87.6444 86 13.2424 186 0.7846
1017 1 11.4865 0.1447 L 0.9173 96.4865 92 17.9423 37 6.86366272 105.1843791 86.8924 85 13.4563 164 0.1447
1018 1 6.8475 0.0862 L 0.9103 89.8475 87 19.5039 59 8.667244911 98.69912658 83.3333 83 10.4661 124 0.0862
1019 1 8.4407 0.1063 L 0.9235 91.4407 87 18.1876 59 8.667244911 99.01474255 83.75 83 10.6765 124 0.1063
1020 1 26.8085 0.3376 G 1.0692 113.8085 114 21.7937 47 7.735777855 106.4426846 88.0562 87 12.9618 184 0.3376

Total number of rows: 54359

Table truncated, full table size 5844 Kbytes.




Supplementary file Size Download File type/resource
GSM82330.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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