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Sample GSM82335 Query DataSets for GSM82335
Status Public on Apr 30, 2007
Title 1252_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18587.6797 238.7177 G 182.8655 18668.6797 8361 19826.7148 149 13.77362347 102.0896712 82.85 81 14.0598 124 238.7177
1002 1 857.7283 11.0156 G 10.1313 935.7283 1072 463.4729 92 10.82303238 92.36016486 78.4091 78 9.5734 182 11.0156
1003 1 6.0784 0.0781 L 0.8854 84.0784 83 12.0063 51 8.058238983 94.95873138 78.8583 78 11.3058 124 0.0781
1004 1 16.5238 0.2122 G 1.0161 93.5238 96 13.4434 42 7.312732697 92.04464221 77.8836 77 10.0298 152 0.2122
1005 1 3.2745 0.0421 L 0.849 79.2745 80 12.2059 51 8.058238983 93.37415793 76.7059 76 11.5828 87 0.0421
1006 1 14.9143 0.1915 L 0.9893 90.9143 93 14.5354 35 6.675580978 91.89449736 77.8057 76 10.5963 181 0.1915
1007 1 14.2895 0.1835 L 0.9643 93.2895 96 14.5998 38 6.955796242 96.74816683 79.1105 79 11.8321 187 0.1835
1008 1 19843.3574 254.8441 G 191.3834 19924.3574 8264 20624.0547 156 14.0934515 104.1070511 83.437 81 15.4047 123 254.8441
1009 1 755.0306 9.6967 G 8.8066 833.0306 967 422.1618 98 11.17038345 94.5918277 78.1218 78 11.0612 162 9.6967
1010 1 649.9556 8.3472 G 8.0125 725.9556 836 366.681 90 10.70474434 90.60235255 75.3481 76 9.7349 187 8.3472
1011 1 110.8313 1.4234 G 2.0753 186.8313 191 48.0429 83 10.28002357 90.02758659 77.6923 76 9.3517 188 1.4234
1012 1 53.2576 0.684 I 1.4571 129.2576 129 27.4912 66 9.166996002 88.70886848 76.2593 76 8.4726 168 0.684
1013 1 31.4032 0.4033 G 1.1612 107.4032 108 15.067 62 8.884866714 92.49219292 76.544 76 10.9948 188 0.4033
1014 1 16.0682 0.2064 L 0.9913 92.0682 92 12.5234 44 7.484820843 92.87362261 77.2339 76 11.2491 177 0.2064
1015 1 22533.4355 289.3922 G 210.6547 22617.4355 14626 22152.1992 158 14.18350601 107.3673624 85.4583 84 15.5782 124 289.3922
1016 1 57.8333 0.7427 G 1.4555 133.8333 130 22.0468 78 9.965575218 91.94932496 77.3736 76 10.6329 188 0.7427
1017 1 13.9667 0.1794 L 0.9664 90.9667 92 11.0393 60 8.740387917 94.13392406 78.8455 77 11.4226 114 0.1794
1018 1 9.6585 0.124 L 0.939 85.6585 87 13.2988 41 7.225152016 91.22528677 77.3827 76 10.1502 168 0.124
1019 1 4.6 0.0591 L 0.8514 85.6 85 14.2467 55 8.368284225 100.5409373 81.5625 81 13.0273 116 0.0591
1020 1 59.5294 0.7645 G 1.3069 151.5294 121 108.7312 51 8.058238983 115.9484563 92.3626 92 15.9656 188 0.7645

Total number of rows: 54359

Table truncated, full table size 5839 Kbytes.




Supplementary file Size Download File type/resource
GSM82335.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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