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Sample GSM82338 Query DataSets for GSM82338
Status Public on Apr 30, 2007
Title 380_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13238.6016 149.4076 G 133.9077 13320.6016 5462 14455.4297 200 15.95769119 99.47596031 82.0634 82 11.6506 213 149.4076
1002 1 989.6666 11.1691 G 9.6477 1073.6666 1160 586.0706 113 11.9948349 111.2867941 86.6455 84 18.1912 114 11.1691
1003 1 -5 -0.0564 L 0.7618 79 79 9.5448 29 6.076507568 103.6981821 85.1758 84 13.1321 188 -0.0564
1004 1 9.9118 0.1119 L 0.9272 95.9118 96 13.9797 34 6.579524517 103.4476486 86.6703 86 11.6318 188 0.1119
1005 1 0.3667 0.0041 L 0.8354 85.3667 84 12.186 30 6.18038702 102.1916854 84.1705 85 11.4611 182 0.0041
1006 1 18.1429 0.2048 G 1.011 99.1429 97 11.9071 35 6.675580978 98.05976894 81.4722 81 11.3732 186 0.2048
1007 1 20.4545 0.2308 L 0.951 106.4545 108 16.533 44 7.484820843 111.9447716 87.7637 86 17.2965 188 0.2308
1008 1 13858.2578 156.4009 G 136.084 13942.2578 5142 15068.417 202 16.03728104 102.4532989 84.9518 84 12.3022 236 156.4009
1009 1 122.2442 1.3796 G 2.0596 205.2442 207 44.9447 86 10.46415806 99.65013754 83.2611 83 11.1001 163 1.3796
1010 1 664.1649 7.4956 G 7.3149 748.1649 808 321.2937 91 10.76405144 102.2793751 84.6142 84 12.1862 131 7.4956
1011 1 154.7553 1.7465 G 2.4163 236.7553 235 61.6653 94 10.94004154 97.98443141 82.4305 82 10.6563 157 1.7465
1012 1 53.7867 0.607 G 1.3875 132.7867 133 20.9197 75 9.772049904 95.70264986 79.5824 79 11.1351 188 0.607
1013 1 37.3788 0.4218 G 1.226 116.3788 115 14.2486 66 9.166996002 94.92394123 80.456 79 10.616 188 0.4218
1014 1 19.2571 0.2173 L 0.9515 100.2571 97 26.2181 35 6.675580978 105.3634107 83.5722 81 16.2423 186 0.2173
1015 1 14825.707 167.3193 G 149.0977 14907.707 6072 15545.5176 226 16.96325874 99.98617252 83.3919 82 11.9908 230 167.3193
1016 1 19.8723 0.2243 G 1.0314 103.8723 104 16.9387 47 7.735777855 100.7145736 84.0608 84 11.1431 187 0.2243
1017 1 9.6129 0.1085 L 0.9131 91.6129 91 14.5588 93 10.88169479 100.3332131 82.901 82 12.2221 200 0.1085
1018 1 8.6667 0.0978 L 0.9414 87.6667 87 12.6737 60 8.740387917 93.12769464 79.25 79 9.4185 104 0.0978
1019 1 -1.5 -0.0169 L 0.7859 81.5 81 15.3366 50 7.978845596 103.7009055 84.1 83 13.8006 124 -0.0169
1020 1 31.2542 0.3527 G 1.1159 115.2542 117 13.754 59 8.667244911 103.2851442 86.4211 84 12.8568 177 0.3527

Total number of rows: 54359

Table truncated, full table size 5862 Kbytes.




Supplementary file Size Download File type/resource
GSM82338.TXT.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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