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Sample GSM82341 Query DataSets for GSM82341
Status Public on Apr 30, 2007
Title 1599_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12636.3955 166.9483 G 111.4232 12726.3955 5747 13316.7773 199 15.91774654 114.2167137 92.8085 90 16.1445 194 166.9483
1002 1 942.6331 12.4538 G 9.3207 1030.6331 1139 545.112 111 11.8882122 110.5745542 88.1828 88 15.0497 95 12.4538
1003 1 9.3784 0.1239 L 0.9291 94.3784 89 17.7967 37 6.86366272 101.5771963 84.3442 85 11.0515 160 0.1239
1004 1 13.7778 0.182 L 0.9611 98.7778 93 19.8873 45 7.569397449 102.7757319 85.0055 85 11.8505 188 0.182
1005 1 -1.9655 -0.026 L 0.8346 82.0345 80 12.6586 29 6.076507568 98.29356784 82.9854 84 9.529 141 -0.026
1006 1 7.9 0.1044 L 0.8992 92.9 95 13.295 30 6.18038702 103.3160353 84.7348 85 12.2107 187 0.1044
1007 1 9.678 0.1279 L 0.9219 95.678 94 14.3568 59 8.667244911 103.780602 85.575 86 11.8537 124 0.1279
1008 1 12080.0615 159.5982 G 117.7496 12166.0615 3250 13861.415 214 16.50676346 103.3215053 87.6973 86 11.5477 226 159.5982
1009 1 390.8866 5.1643 G 4.4647 478.8866 523 174.8344 97 11.11324596 107.2608791 87.4472 88 12.8406 167 5.1643
1010 1 572 7.5571 G 6.5104 656 705 293.0059 98 11.17038345 100.7619124 83.9138 84 11.1746 180 7.5571
1011 1 70.275 0.9285 G 1.5121 153.275 151 24.2141 80 10.09253025 101.3633382 83.5056 83 12.2422 186 0.9285
1012 1 140.8902 1.8614 G 2.2711 220.8902 232 50.4272 82 10.21790791 97.26089513 81.4066 80 11.5073 188 1.8614
1013 1 30.5333 0.4034 G 1.096 113.5333 115 15.0858 60 8.740387917 103.5878312 83.2033 83 13.7252 188 0.4034
1014 1 35.4286 0.4681 G 1.1804 116.4286 117 14.6371 63 8.956232071 98.63303311 82.1429 81 11.7554 188 0.4681
1015 1 13745.8057 181.6055 G 131.7115 13830.8057 6468 14413.0498 241 17.51715469 105.0083117 86.3684 85 13.3389 236 181.6055
1016 1 125.8936 1.6633 G 2.0481 210.8936 212 40.4276 94 10.94004154 102.9712458 85.3681 85 11.9808 188 1.6633
1017 1 27.061 0.3575 G 1.1074 108.061 107 14.868 82 10.21790791 97.58082282 82.9417 81 11.0539 124 0.3575
1018 1 10.6809 0.1411 L 0.9422 91.6809 95 14.5297 47 7.735777855 97.30829561 82.1543 81 10.8722 168 0.1411
1019 1 10.2586 0.1355 L 0.9256 91.2586 91 13.1169 58 8.59348011 98.58895691 81.3333 81 11.726 109 0.1355
1020 1 23 0.3039 G 1.0063 102 102 13.7409 69 9.373021126 101.3639475 81.7253 79 14.9093 93 0.3039

Total number of rows: 54359

Table truncated, full table size 5858 Kbytes.




Supplementary file Size Download File type/resource
GSM82341.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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