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Sample GSM82345 Query DataSets for GSM82345
Status Public on Apr 30, 2007
Title 1250_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12160.1426 162.3493 G 130.3434 12238.1426 4321 13234.2559 229 17.07547569 93.89150789 79.0089 78 10.5943 233 162.3493
1002 1 1000.4202 13.3565 G 11.1913 1082.4202 1166 574.1061 121 12.41217041 96.72014749 81.5089 82 9.8134 116 13.3565
1003 1 1.7924 0.0239 L 0.8213 87.7924 84 16.0522 53 8.214724541 106.8911957 86.975 86 13.9275 124 0.0239
1004 1 20.4118 0.2725 G 1.0309 101.4118 101 12.0638 51 8.058238983 98.37611877 79.9615 81 11.5841 188 0.2725
1005 1 7.0909 0.0947 L 0.8962 83.0909 82 11.0051 33 6.482044697 92.71580111 75.8122 76 11.1439 187 0.0947
1006 1 24.1475 0.3224 G 1.1108 97.1475 96 12.1572 61 8.812923431 87.46058266 74.2921 73 9.6404 184 0.3224
1007 1 16.8261 0.2246 G 1.0237 91.8261 93 11.7108 46 7.653039932 89.69589011 75.3516 75 9.7973 188 0.2246
1008 1 12649.9414 168.8886 G 132.6664 12728.9414 5202 13319.3613 227 17.00074577 95.94695637 79.5965 79 11.298 236 168.8886
1009 1 206.0707 2.7512 G 3.1775 281.0707 296 83.383 99 11.22723103 88.45680875 75.5278 75 8.9712 186 2.7512
1010 1 1034.2642 13.8084 G 12.3284 1108.2642 1220 581.6827 108 11.72646046 89.89503601 75.04 74 10.5967 181 13.8084
1011 1 88.8929 1.1868 G 1.7845 164.8929 165 30.5657 84 10.34176636 92.40339306 76.8022 76 10.9356 188 1.1868
1012 1 233.8778 3.1225 G 3.3661 310.8778 320 101.1316 90 10.70474434 92.35678509 77.1264 77 10.2379 188 3.1225
1013 1 62.0256 0.8281 G 1.4934 140.0256 139 21.1515 78 9.965575218 93.76218085 78.0495 78 10.5081 188 0.8281
1014 1 19.3966 0.259 G 1.0443 96.3966 98 13.1266 58 8.59348011 92.3102709 76.4341 77 10.2068 188 0.259
1015 1 14171.2637 189.1997 G 149.2591 14249.2637 7986 13768.8955 247 17.73387146 95.46663635 79.9252 78 11.6444 222 189.1997
1016 1 35.8283 0.4783 G 1.1977 113.8283 113 16.2058 99 11.22723103 95.03603376 77.6525 78 11.3574 122 0.4783
1017 1 10.8919 0.1454 L 0.9602 88.8919 90 14.6883 74 9.706685066 92.57771968 77.8667 78 9.7185 124 0.1454
1018 1 6 0.0801 L 0.9071 85 84 14.57 63 8.956232071 93.701481 79.9143 79 9.801 109 0.0801
1019 1 4.7778 0.0638 L 0.8722 84.7778 84 11.5031 54 8.291859627 97.20111065 81.1579 80 11.4674 97 0.0638
1020 1 35.7263 0.477 G 1.137 120.7263 119 17.8175 95 10.9980793 106.1785451 88.7143 85 14.119 102 0.477

Total number of rows: 54359

Table truncated, full table size 5833 Kbytes.




Supplementary file Size Download File type/resource
GSM82345.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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