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Sample GSM82349 Query DataSets for GSM82349
Status Public on Apr 30, 2007
Title 783_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11918.2822 175.6675 G 124.0685 11997.2822 5459 12634.6807 172 14.79855442 96.69883054 80.1417 79 11.7992 124 175.6675
1002 1 752.1042 11.0855 G 9.0402 828.1042 933 381.5701 96 11.05581284 91.60288034 77.2527 76 10.4019 188 11.0855
1003 1 4 0.059 L 0.8718 81 81 13.5557 33 6.482044697 92.90590101 78.2449 77 10.6039 153 0.059
1004 1 12.2308 0.1803 L 0.9719 90.2308 93 13.0236 39 7.04672575 92.83894997 76.5556 78 9.8926 168 0.1803
1005 1 2.9767 0.0439 L 0.873 77.9767 77 11.93 86 10.46415806 89.32270163 76.3027 75 9.5485 191 0.0439
1006 1 14 0.2064 L 0.979 89 89 10.6743 34 6.579524517 90.91157869 76.3052 75 10.6077 160 0.2064
1007 1 15.5417 0.2291 G 1.0166 90.5417 91 15.0665 48 7.817640305 89.06371494 75.1345 75 9.3758 177 0.2291
1008 1 12078.9541 178.0357 G 127.4811 12157.9541 5692 12763.2764 177 15.0121088 95.37062715 79.7 79 10.9138 124 178.0357
1009 1 259.0555 3.8183 G 3.7592 334.0555 355 123.8009 90 10.70474434 88.86292848 75.533 75 9.242 188 3.8183
1010 1 1056.4193 15.5709 G 12.7376 1131.4193 1348 614.8406 93 10.88169479 88.82535359 75.544 75 9.2169 188 15.5709
1011 1 68.9028 1.0156 G 1.5988 142.9028 143 23.4314 72 9.574614525 89.37917171 75.0824 74 10.2528 188 1.0156
1012 1 58.4595 0.8617 G 1.4921 132.4595 132 22.2827 74 9.706685066 88.77114502 74.1978 74 9.8474 188 0.8617
1013 1 40.4648 0.5964 G 1.2983 116.4648 116 15.869 71 9.507891655 89.70578688 75.7418 76 9.1372 188 0.5964
1014 1 10.4444 0.1539 L 0.9641 84.4444 85 13.1328 36 6.770275116 87.59261996 75.0723 74 9.0617 172 0.1539
1015 1 12529.7891 184.6807 G 131.1655 12608.7891 5105 13456.2168 208 16.27371597 96.12885528 79.6964 79 11.4192 232 184.6807
1016 1 72.1412 1.0633 G 1.5934 151.1412 154 25.2298 85 10.40314198 94.8520321 78.8167 79 10.568 186 1.0633
1017 1 10.9487 0.1614 L 0.957 87.9487 88 14.133 39 7.04672575 91.90077565 76.9888 77 9.9339 185 0.1614
1018 1 7.1936 0.106 L 0.9152 83.1936 78 16.2568 31 6.282549381 90.90617046 76.3154 76 9.9374 155 0.106
1019 1 2.3333 0.0344 L 0.8673 79.3333 79 12.5065 84 10.34176636 91.47546997 76.9167 77 9.6503 198 0.0344
1020 1 10.3513 0.1526 L 0.9278 92.3513 92 13.4148 37 6.86366272 99.53755709 82.5342 82 11.6917 167 0.1526

Total number of rows: 54359

Table truncated, full table size 5824 Kbytes.




Supplementary file Size Download File type/resource
GSM82349.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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