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Sample GSM82355 Query DataSets for GSM82355
Status Public on Apr 30, 2007
Title 1599_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13145.6455 170.1497 G 138.3323 13223.6455 7290 13521.4668 177 15.0121088 95.59330703 79.0614 78 11.7289 236 170.1497
1002 1 803.0777 10.3946 G 9.4933 881.0777 978 461.5967 105 11.56244564 92.81034182 77.8631 78 9.8736 174 10.3946
1003 1 -2.7647 -0.0358 L 0.7947 77.2353 77 11.5853 51 8.058238983 97.18997763 80.6983 80 11.46 120 -0.0358
1004 1 24.1957 0.3132 G 1.0721 103.1957 103 17.2911 46 7.653039932 96.25121197 80.0368 79 11.5008 169 0.3132
1005 1 0.5938 0.0077 L 0.8126 79.5938 81 11.5647 32 6.383076668 97.95366278 79.3129 79 12.6358 169 0.0077
1006 1 40.3333 0.5221 G 1.1684 126.3333 128 23.7633 51 8.058238983 108.1231274 86.956 86 14.7487 188 0.5221
1007 1 16.6279 0.2152 L 0.9952 95.6279 93 15.525 43 7.39927721 96.08747933 79.5879 79 11.3917 188 0.2152
1008 1 13405.1172 173.5081 G 131.5112 13489.1172 7507 13638.418 173 14.84151077 102.5700663 83.8667 84 12.38 124 173.5081
1009 1 324.2472 4.1969 G 4.2926 402.2472 442 141.8669 89 10.64510822 93.70681686 79.2416 78 10.4712 155 4.1969
1010 1 709.0222 9.1772 G 8.6306 784.0222 879 398.7401 90 10.70474434 90.8419144 76.1758 75 10.5613 188 9.1772
1011 1 81.6026 1.0562 G 1.7229 157.6026 163 31.7705 78 9.965575218 91.472845 77.3956 76 10.3152 188 1.0562
1012 1 221.9494 2.8728 G 3.3171 296.9494 314 108.0387 79 10.02925301 89.51993983 74.8462 75 9.68 188 2.8728
1013 1 39.4286 0.5103 G 1.2584 116.4286 115 14.6722 70 9.44069767 92.52477466 76.8297 77 10.3498 188 0.5103
1014 1 32.1714 0.4164 G 1.2073 108.1714 106 15.0247 70 9.44069767 89.59863626 76.0989 76 9.0658 188 0.4164
1015 1 15176.9844 196.4422 G 161.0656 15253.9844 7916 15396.8799 202 16.03728104 94.70665746 77.5158 77 11.8044 229 196.4422
1016 1 42.7105 0.5528 G 1.2918 118.7105 119 15.5587 76 9.836981773 91.89800501 76.7303 76 10.5987 184 0.5528
1017 1 15.1633 0.1963 L 0.9874 92.1633 95 13.4648 100 11.28379154 93.33749717 77.3867 77 10.8917 233 0.1963
1018 1 13.9706 0.1808 L 0.9964 90.9706 91 12.275 34 6.579524517 91.29606582 77.4333 77 9.5307 186 0.1808
1019 1 12.9677 0.1678 L 0.9617 92.9677 90 19.7895 93 10.88169479 96.66623763 80.1768 80 11.1108 170 0.1678
1020 1 8 0.1035 L 0.8909 89 91 15.923 35 6.675580978 99.89802104 81.5099 81 12.5987 157 0.1035

Total number of rows: 54359

Table truncated, full table size 5841 Kbytes.




Supplementary file Size Download File type/resource
GSM82355.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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