NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM82364 Query DataSets for GSM82364
Status Public on Apr 30, 2007
Title 1246_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12516.29 184.0981 G 131.1903 12596.29 3596 14438.6025 157 14.13855076 96.01543485 79.95 80 10.677 124 184.0981
1002 1 861.7357 12.675 G 10.0816 939.7357 1106 469.5723 87 10.52482033 93.21332542 76.8791 78 10.1422 188 12.675
1003 1 7.9091 0.1163 L 0.9183 85.9091 86 13.8134 33 6.482044697 93.55494414 77.3315 78 10.37 184 0.1163
1004 1 8.2353 0.1211 L 0.9385 84.2353 84 14.7709 85 10.40314198 89.75336918 76.7412 76 9.1689 236 0.1211
1005 1 5.8824 0.0865 L 0.8968 81.8824 84 13.3961 34 6.579524517 91.30387708 76.3407 76 10.2026 188 0.0865
1006 1 15.0476 0.2213 G 1.0077 91.0476 93 14.1522 42 7.312732697 90.35606328 76.9231 76 9.5707 188 0.2213
1007 1 14.75 0.217 L 0.9935 92.75 94 11.41 36 6.770275116 93.35988926 77.7308 78 10.2399 188 0.217
1008 1 13570.6455 199.6063 G 144.1378 13648.6455 5817 15007.2002 177 15.0121088 94.69161436 78.7 78 11.1277 124 199.6063
1009 1 368.8602 5.4254 G 4.9333 444.8602 500 189.6279 93 10.88169479 90.17559864 76.2825 76 9.4504 183 5.4254
1010 1 681.6196 10.0257 G 8.1884 758.6196 938 414.5168 92 10.82303238 92.64604812 77.3956 77 10.4307 188 10.0257
1011 1 75.3919 1.1089 G 1.6579 150.3919 152 26.4252 74 9.706685066 90.71420049 75.8407 75 10.4761 188 1.1089
1012 1 87.7324 1.2904 G 1.786 163.7324 169 35.8058 71 9.507891655 91.67323701 75.9721 76 10.4488 185 1.2904
1013 1 38.5758 0.5674 G 1.2621 113.5758 112 13.3622 66 9.166996002 89.99115978 75.9505 75 9.9941 188 0.5674
1014 1 67.3472 0.9906 G 1.5734 142.3472 141 27.1002 72 9.574614525 90.47122237 75.4835 75 10.3141 188 0.9906
1015 1 12083.6982 177.7352 G 126.2988 12162.6982 4441 13761.4736 151 13.86575508 96.30099369 79.6833 79 11.534 124 177.7352
1016 1 24.1569 0.3553 G 1.1122 101.1569 101 10.6814 51 8.058238983 90.95151312 76.0964 77 9.301 172 0.3553
1017 1 20.439 0.3006 G 1.0525 95.439 94 11.8857 41 7.225152016 90.67760747 75.2647 75 10.4517 140 0.3006
1018 1 12.8919 0.1896 L 0.9765 89.8919 92 11.7514 37 6.86366272 92.05333095 77.1868 77 10.0356 188 0.1896
1019 1 10.3143 0.1517 L 0.9467 86.3143 86 14.2423 35 6.675580978 91.16998496 77.1319 76 10.1133 188 0.1517
1020 1 19.8261 0.2916 G 1.0574 96.8261 97 11.1634 46 7.653039932 91.56911577 77.522 77 9.7127 188 0.2916

Total number of rows: 54359

Table truncated, full table size 5820 Kbytes.




Supplementary file Size Download File type/resource
GSM82364.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap