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Sample GSM82365 Query DataSets for GSM82365
Status Public on Apr 30, 2007
Title 1581_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14617.5479 153.297 G 145.5332 14700.5479 6902 15920.0859 148 13.72732544 101.0116423 84.3833 83 12.0078 124 153.297
1002 1 1242.1686 13.0269 G 13.8587 1323.1686 1492 760.5502 89 10.64510822 95.47586866 81.1508 81 9.6506 185 13.0269
1003 1 3.4186 0.0359 L 0.879 84.4186 84 11.9908 86 10.46415806 96.0424708 81.2718 81 10.0283 203 0.0359
1004 1 16 0.1678 G 1.0011 94 93 10.433 33 6.482044697 93.89457214 78.4211 78 10.5964 158 0.1678
1005 1 13.5676 0.1423 L 0.9716 91.5676 91 13.4477 37 6.86366272 94.2430638 78.3017 78 10.8287 185 0.1423
1006 1 20.9487 0.2197 G 1.0631 101.9487 100 12.7761 39 7.04672575 95.89404209 81.033 81 9.9294 188 0.2197
1007 1 25.6379 0.2689 G 1.1156 107.6379 107 11.5903 58 8.59348011 96.48585837 81.8297 82 9.6572 188 0.2689
1008 1 16441.4023 172.4241 G 156.7815 16527.4023 8686 17212.4805 156 14.0934515 105.4168034 86.825 86 12.9445 124 172.4241
1009 1 609.9231 6.3964 G 7.145 691.9231 790 304.1807 91 10.76405144 96.840634 81.5057 82 9.8938 182 6.3964
1010 1 1387.9896 14.5561 G 15.2204 1468.9896 1617 921.7568 96 11.05581284 96.51474018 81.8897 81 10.3432 151 14.5561
1011 1 95.5921 1.0025 G 1.8433 174.5921 180 38.0509 76 9.836981773 94.71935712 80.1285 79 10.4796 185 1.0025
1012 1 156.3117 1.6393 G 2.461 237.3117 260 71.8634 77 9.90148735 96.4274564 80.6374 81 10.285 188 1.6393
1013 1 55.6027 0.5831 G 1.4373 136.6027 134 21.8668 73 9.640875816 95.04138211 82.1264 81 9.3609 188 0.5831
1014 1 231.4524 2.4273 G 3.2964 312.4524 344 106.4352 84 10.34176636 94.78480603 80.5714 81 9.1899 188 2.4273
1015 1 15851.875 166.2416 G 150.1239 15936.875 7042 17141.3047 130 12.86550236 106.1581673 86.2418 85 14.1054 188 166.2416
1016 1 39.5556 0.4148 G 1.2554 121.5556 123 15.7676 54 8.291859627 96.82331108 81.9176 82 9.8822 188 0.4148
1017 1 15 0.1573 G 1.0121 96 97 10.4569 52 8.136857986 94.8510043 81.0495 81 9.234 188 0.1573
1018 1 14.5714 0.1528 L 0.9899 95.5714 94 13.0412 35 6.675580978 96.54615771 81.7967 81 10.3641 188 0.1528
1019 1 10.5526 0.1107 L 0.9473 91.5526 91 12.1063 38 6.955796242 96.64218601 81.4011 81 10.4281 188 0.1107
1020 1 44.1818 0.4633 G 1.2849 124.1818 125 16.3408 55 8.368284225 96.64823621 81.7967 80 11.0988 188 0.4633

Total number of rows: 54359

Table truncated, full table size 5851 Kbytes.




Supplementary file Size Download File type/resource
GSM82365.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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