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Sample GSM82371 Query DataSets for GSM82371
Status Public on Apr 30, 2007
Title 1250_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14082.5469 190.6267 G 137.5022 14166.5469 6944 15017.623 152 13.91159248 103.0277969 83.45 84 12.6852 124 190.6267
1002 1 1192.4 16.1408 G 13.2804 1270.4 1508 758.4604 95 10.9980793 95.65975539 79.5714 78 11.7732 188 16.1408
1003 1 6.2105 0.0841 L 0.8884 89.2105 89 11.1359 38 6.955796242 100.4155931 83.4156 83 11.6104 160 0.0841
1004 1 7.6477 0.1035 L 0.9155 88.6477 88 13.5513 88 10.58513451 96.83307344 81.8525 81 10.5554 225 0.1035
1005 1 1.6742 0.0227 L 0.8552 80.6742 81 10.6632 89 10.64510822 94.33191069 79.1675 79 10.2213 211 0.0227
1006 1 17.8636 0.2418 G 1.0412 97.8636 99 15.5704 44 7.484820843 93.98956284 79.8228 80 9.3264 164 0.2418
1007 1 24.1111 0.3264 G 1.0741 104.1111 104 14.0997 54 8.291859627 96.92795413 80.544 80 11.2853 188 0.3264
1008 1 15106.7285 204.4904 G 151.5475 15188.7285 6452 16133.8711 168 14.62546539 100.2241897 84.125 82 12.1495 124 204.4904
1009 1 237.25 3.2115 G 3.3246 316.25 344 91.0607 84 10.34176636 95.12518787 79.2582 79 10.7501 188 3.2115
1010 1 1306.4894 17.6851 G 15.117 1384.4894 1726 814.1818 94 10.94004154 91.5846487 77.4835 78 9.0564 188 17.6851
1011 1 78 1.0558 G 1.6647 157 157 32.383 79 10.02925301 94.31381148 79.511 79 10.2092 188 1.0558
1012 1 43.3857 0.5873 G 1.3037 121.3857 120 17.7814 70 9.44069767 93.10818231 78.7967 78 10.0721 188 0.5873
1013 1 40.3651 0.5464 G 1.228 121.3651 121 15.142 63 8.956232071 98.83294496 81.3571 81 11.8886 188 0.5464
1014 1 9.75 0.132 L 0.944 91.75 94 12.083 32 6.383076668 97.19610387 82.0055 82 10.1307 188 0.132
1015 1 13327.209 180.4022 G 130.2461 13412.209 5576 14858.7148 150 13.81976604 102.9759141 84.4583 85 11.9839 124 180.4022
1016 1 102.0556 1.3815 G 1.8847 183.0556 195 42.0934 72 9.574614525 97.12836654 80.544 81 10.7522 188 1.3815
1017 1 10.186 0.1379 L 0.9646 90.186 91 12.8593 43 7.39927721 93.49911338 80.0714 80 8.9994 188 0.1379
1018 1 5.0345 0.0681 L 0.9126 85.0345 85 13.4945 58 8.59348011 93.1805555 79.3673 80 8.787 102 0.0681
1019 1 1.2471 0.0169 L 0.8544 82.2471 80 12.5744 85 10.40314198 96.26032906 81.0383 81 10.1736 189 0.0169
1020 1 36.1607 0.4895 G 1.1989 121.1607 118 14.1923 56 8.444016457 101.0615586 86.2198 85 10.7077 188 0.4895

Total number of rows: 54359

Table truncated, full table size 5828 Kbytes.




Supplementary file Size Download File type/resource
GSM82371.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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