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Sample GSM82379 Query DataSets for GSM82379
Status Public on Apr 30, 2007
Title 1844_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 18501.209 373.8586 G 178.8869 18584.209 11000 18619.3438 160 14.27299309 103.8880365 84.0333 83 13.9254 124 373.8586
1002 1 742.4141 15.0021 G 8.4338 821.4141 896 383.5038 101 11.34007072 97.39494704 80.4 79 12.2633 181 15.0021
1003 1 3.9355 0.0795 L 0.8534 83.9355 87 11.2621 31 6.282549381 98.34984571 81.2143 80 12.2332 188 0.0795
1004 1 14.587 0.2948 L 0.9571 95.587 96 18.7519 46 7.653039932 99.87167143 82.0782 81 12.5811 185 0.2948
1005 1 8.4828 0.1714 L 0.9195 87.4828 81 26.9554 87 10.52482033 95.14439421 79.6935 79 10.7629 207 0.1714
1006 1 16.5435 0.3343 L 0.9841 96.5435 92 21.0038 46 7.653039932 98.09921866 80.7143 80 12.0661 153 0.3343
1007 1 21.15 0.4274 G 1.0608 100.15 95 33.2412 40 7.136496544 94.40876007 78.6279 79 10.2725 178 0.4274
1008 1 19125.6563 386.477 G 177.0542 19212.6563 11251 18924.4648 165 14.49429321 108.5128434 89.7083 87 14.3419 124 386.477
1009 1 290.3258 5.8667 G 3.6602 373.3258 376 109.01 89 10.64510822 101.9973465 84.0385 83 12.6649 188 5.8667
1010 1 518.0778 10.4689 G 5.9905 599.0778 649 262.8686 90 10.70474434 100.0042601 82.4205 81 12.6695 182 10.4689
1011 1 62.4615 1.2622 G 1.465 143.4615 145 20.1925 78 9.965575218 97.92920182 82.0879 81 11.2861 188 1.2622
1012 1 54.9583 1.1106 G 1.3889 134.9583 134 24.5495 72 9.574614525 97.1719767 80.2747 80 11.448 188 1.1106
1013 1 18.5692 0.3752 G 1.0205 99.5692 101 15.0843 65 9.097283363 97.56945613 81.1099 81 11.0463 188 0.3752
1014 1 22.1333 0.4473 G 1.0476 101.1333 91 48.6838 60 8.740387917 96.54106923 80.0593 79 11.694 122 0.4473
1015 1 18942.4063 382.774 G 173.8443 19027.4063 10767 18620.4844 182 15.22266674 109.4508592 86.7522 85 16.3006 234 382.774
1016 1 13.7429 0.2777 L 0.9656 97.7429 98 12.2716 35 6.675580978 101.2271844 84.1278 84 11.4848 186 0.2777
1017 1 5.3824 0.1088 L 0.8831 86.3824 84 11.3137 34 6.579524517 97.81499459 82.1962 81 11.21 164 0.1088
1018 1 3.9121 0.0791 L 0.8612 86.9121 85 17.566 91 10.76405144 100.9194081 84.0407 83 11.9463 178 0.0791
1019 1 6.3333 0.128 L 0.8885 87.3333 84 19.8654 87 10.52482033 98.28927676 80.8317 81 11.5262 210 0.128
1020 1 16.6216 0.3359 L 0.9365 104.6216 100 30.2747 37 6.86366272 111.7146323 88.6264 88 15.8098 188 0.3359

Total number of rows: 54359

Table truncated, full table size 5818 Kbytes.




Supplementary file Size Download File type/resource
GSM82379.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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