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Sample GSM827107 Query DataSets for GSM827107
Status Public on Nov 05, 2011
Title Heart 2 month old WT rep4 (mouse 5971)
Sample type RNA
 
Source name Heart
Organism Mus musculus
Characteristics strain: wild type
genetic background: C57BL/6J
tissue: heart
age: 2 mo
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol folowed by Dnase treatment using Qiagen Rneasy minikit using manufacturers protocls. Quality control was performed with Agilent 2100 Expert Bioanalyzer
Label biotin
Label protocol Biotinylated cRMA were prepared with the Ambion MessageAMP kit for Illumina arrays
 
Hybridization protocol Standard Illumina hydridization protocols
Scan protocol Standard Illumina scanning protocols
Description Wildtype replicate 4 625 mg/Kg Doxycycline diet
Data processing The data were normalized using quantile normalization
 
Submission date Nov 03, 2011
Last update date Nov 05, 2011
Contact name Michael Andrew Kiebish
E-mail(s) kiebish@wustl.edu
Phone 314-362-2229
Fax 314-362-1402
Organization name Washington University School of Medicine
Department Internal Medicine
Lab Richard W. Gross
Street address 660 South Euclid Avenue, Campus Box 8020
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL6885
Series (1)
GSE33452 Genome-wide analysis of gene transcription in myocardium of the doxycycline inducible Tafazzin shRNA knockdown mouse model of Barth syndrome

Data table header descriptions
ID_REF
VALUE Quantile normalization
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3512.985 0
ILMN_2721178 1195.757 0
ILMN_3033922 446.2008 0
ILMN_3092673 1529.878 0
ILMN_2816356 6.913864 0.2518797
ILMN_2808939 21.40031 0.02756892
ILMN_2634564 47.39677 0
ILMN_2737647 9.830592 0.1704261
ILMN_2734484 4.400351 0.3258145
ILMN_2952292 20.59228 0.03132832
ILMN_2699078 -8.328126 0.7794486
ILMN_1213681 806.5671 0
ILMN_2735413 11.82503 0.131579
ILMN_2735415 -14.2137 0.8897243
ILMN_2891688 67.22971 0
ILMN_2637698 109.8498 0
ILMN_2674228 143.7185 0
ILMN_2601546 13.72262 0.1052632
ILMN_1230831 10.27753 0.1616541
ILMN_2848071 -8.351753 0.7807018

Total number of rows: 25697

Table truncated, full table size 754 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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