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Sample GSM837290 Query DataSets for GSM837290
Status Public on Nov 19, 2011
Title Wholebrain_B6_Cloz_BB701_1.1
Sample type RNA
 
Source name brain,Wholebrain,B6,Cloz
Organism Mus musculus
Characteristics strain: B6
treatment: clozapine
part of brain: Wholebrain
body wt (g): 24.7
dob: 2009-08-30
weaned: 2013-09-24
litter size: 6
mouse id: BB0701
time inject: 10:30
time sac: 1:30
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from frozen brains using a Biopulverizer (Biospec). Pulverized samples were placed in tubes containing 1ml Trizol reagent (Invitrogen) and a stainless steel bead. Samples were shaken for 5 minutes on a Tissuelyzer apparatus (Mixer Mill 300, Qiagen) and incubated at room temperature for 5 minutes. We added 200 µl chloroform (Fisher) and then samples were sequentially shaken for 15 seconds on a Tissuelyzer, incubated at room temperature for 3 minutes, and centrifuged at 10,000 rpm for 15 min at 4°C. The supernatant was transferred to a gDNA Eliminator spin column (RNeasy plus mini kit, Qiagen) and processed according to the manufacturer instructions.
Label biotin
Label protocol All samples were processed with the GeneChip WT terminal labeling and hybridization protocol in conjunction with the Ambion WT expression kit according the manufacturers instructions.
 
Hybridization protocol All samples were processed with the GeneChip WT terminal labeling and hybridization protocol in conjunction with the Ambion WT expression kit according the manufacturers instructions.
Scan protocol Affymetrics GeneChip
Data processing Affymetrics Expression Console V1.1
 
Submission date Nov 18, 2011
Last update date Nov 19, 2011
Contact name Vasyl Zhabotynsky
E-mail(s) vasyl@unc.edu
Phone (919) 843-6475
Fax (919) 843-4682
Organization name University of North Carolina at Chapel Hill
Street address 120 Mason Farm Road 5000 D, Genetic Medicine Building
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL11533
Series (1)
GSE33822 Transcriptome Atlases Of Mouse Brain Reveals Differential Expression Across Brain Regions And Genetic Backgrounds

Data table header descriptions
ID_REF
VALUE rma gene default signal, log2 transformed

Data table
ID_REF VALUE
10344614 6.177296
10344616 2.968785
10344620 4.400493
10344622 5.470228
10344624 9.007568
10344633 8.959517
10344637 10.54675
10344653 7.198414
10344658 9.429616
10344674 3.451348
10344679 7.652813
10344707 10.29778
10344713 8.635635
10344715 4.269594
10344717 3.438226
10344719 4.510245
10344721 2.904342
10344723 6.966712
10344725 8.635643
10344741 10.33428

Total number of rows: 28310

Table truncated, full table size 494 Kbytes.




Supplementary file Size Download File type/resource
GSM837290.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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