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Sample GSM840504 Query DataSets for GSM840504
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT0_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT0
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-A
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6594.141 42 306.5866 0
ILMN_2721178 1443.375 34 81.32194 0
ILMN_3033922 3730.946 38 178.5678 0
ILMN_3092673 21017.37 44 921.3238 0
ILMN_2816356 277.3873 34 19.57936 0.1328321
ILMN_2808939 4568.039 45 196.7117 0
ILMN_2634564 1038.613 34 92.0447 0
ILMN_2737647 246.068 36 15.76058 0.4210526
ILMN_2734484 1551.883 40 100.8268 0
ILMN_2952292 604.0389 45 31.68854 0
ILMN_2699078 227.6003 49 12.99296 0.6892231
ILMN_1213681 654.0394 38 33.85894 0
ILMN_2735413 1385.439 41 99.96942 0
ILMN_2735415 1792.186 46 125.1876 0
ILMN_2891688 1553.235 32 118.3071 0
ILMN_2637698 2862.985 43 141.3965 0
ILMN_2674228 467.639 29 23.1653 0
ILMN_2601546 300.7035 41 16.34181 0.03634085
ILMN_1230831 228.7975 22 16.87947 0.6704261
ILMN_2848071 1521.582 34 95.15314 0

Total number of rows: 25697

Table truncated, full table size 1037 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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