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Sample GSM840505 Query DataSets for GSM840505
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT0_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT0
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-B
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6693.643 47 258.3652 0
ILMN_2721178 1651.984 37 109.9912 0
ILMN_3033922 3777.651 46 196.7003 0
ILMN_3092673 20939.24 53 842.8354 0
ILMN_2816356 267.4869 33 18.45376 0.1729323
ILMN_2808939 4006.083 35 151.9156 0
ILMN_2634564 1079.905 30 82.97522 0
ILMN_2737647 295.4233 31 23.58325 0.05889724
ILMN_2734484 1657.586 39 109.0178 0
ILMN_2952292 633.1036 44 34.28003 0
ILMN_2699078 214.717 34 15.12391 0.8796992
ILMN_1213681 774.6806 44 58.41419 0
ILMN_2735413 1194.624 33 104.8967 0
ILMN_2735415 1853.75 49 79.69785 0
ILMN_2891688 1611.704 32 95.20625 0
ILMN_2637698 2433.401 44 153.5612 0
ILMN_2674228 577.7706 38 39.60217 0
ILMN_2601546 294.173 39 20.3149 0.06140351
ILMN_1230831 208.9645 28 18.17878 0.9273183
ILMN_2848071 1329.736 36 84.08568 0

Total number of rows: 25697

Table truncated, full table size 1032 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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