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Sample GSM840506 Query DataSets for GSM840506
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT4_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT4
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-C
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6502.096 44 323.8011 0
ILMN_2721178 1741.081 37 78.02579 0
ILMN_3033922 4142.959 44 216.0077 0
ILMN_3092673 22271.41 42 982.0156 0
ILMN_2816356 257.8035 29 15.27544 0.283208
ILMN_2808939 5149.201 35 212.3769 0
ILMN_2634564 1246.745 27 124.923 0
ILMN_2737647 236.6115 28 14.18114 0.5551379
ILMN_2734484 1637.039 37 114.7439 0
ILMN_2952292 630.9989 50 33.3604 0
ILMN_2699078 212.2065 40 12.8783 0.8922306
ILMN_1213681 887.3099 54 44.33799 0
ILMN_2735413 1363.368 36 79.50508 0
ILMN_2735415 2063.153 43 117.2712 0
ILMN_2891688 1250.287 28 77.52034 0
ILMN_2637698 2206.599 37 134.3081 0
ILMN_2674228 579.4565 33 50.19146 0
ILMN_2601546 268.7938 37 15.66042 0.2005012
ILMN_1230831 270.8805 29 16.15131 0.1904762
ILMN_2848071 1544.009 42 126.5812 0

Total number of rows: 25697

Table truncated, full table size 1040 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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