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Sample GSM840507 Query DataSets for GSM840507
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT4_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT4
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-D
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6472.806 54 230.6051 0
ILMN_2721178 1668.083 58 63.22631 0
ILMN_3033922 4044.634 45 132.4163 0
ILMN_3092673 21093.33 41 730.3134 0
ILMN_2816356 291.0565 20 28.657 0.0764411
ILMN_2808939 5014.603 42 212.3171 0
ILMN_2634564 1221.015 28 109.6295 0
ILMN_2737647 253.2342 21 16.86197 0.3082707
ILMN_2734484 2001.059 44 93.94099 0
ILMN_2952292 594.1121 52 25.7849 0
ILMN_2699078 225.7368 37 15.48228 0.7268171
ILMN_1213681 848.477 32 64.63203 0
ILMN_2735413 1438.452 33 102.3198 0
ILMN_2735415 1921.217 34 116.9614 0
ILMN_2891688 1473.353 39 61.02921 0
ILMN_2637698 2412.83 50 94.73104 0
ILMN_2674228 568.6195 43 36.10953 0
ILMN_2601546 249.6575 40 13.85182 0.3558897
ILMN_1230831 251.9687 39 16.38376 0.3270677
ILMN_2848071 1560.459 26 111.1861 0

Total number of rows: 25697

Table truncated, full table size 1037 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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