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Sample GSM840508 Query DataSets for GSM840508
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT8_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT8
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-E
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 7237.979 38 298.5082 0
ILMN_2721178 1891.904 45 85.32404 0
ILMN_3033922 3555.253 41 179.2091 0
ILMN_3092673 19579.19 49 809.5838 0
ILMN_2816356 261.9746 38 17.32852 0.2393484
ILMN_2808939 4684.752 45 197.3299 0
ILMN_2634564 1221.99 42 99.02942 0
ILMN_2737647 241.3949 27 15.09589 0.5050125
ILMN_2734484 1794.901 50 114.4245 0
ILMN_2952292 550.8514 52 26.45656 0
ILMN_2699078 236.8232 47 12.9443 0.5601504
ILMN_1213681 812.184 52 37.2795 0
ILMN_2735413 1522.711 44 93.04958 0
ILMN_2735415 1971.539 43 90.86681 0
ILMN_2891688 1578.053 32 121.4933 0
ILMN_2637698 2631.273 41 122.1753 0
ILMN_2674228 552.7443 45 36.43102 0
ILMN_2601546 245.9743 46 11.81979 0.4310777
ILMN_1230831 234.2241 44 16.11637 0.5989975
ILMN_2848071 1146.794 26 79.63377 0

Total number of rows: 25697

Table truncated, full table size 1031 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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