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Sample GSM840509 Query DataSets for GSM840509
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT8_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT8
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-F
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 7321.297 44 213.6555 0
ILMN_2721178 1912.445 28 142.3623 0
ILMN_3033922 3313.837 31 208.8569 0
ILMN_3092673 20440.12 54 649.2877 0
ILMN_2816356 260.9764 29 18.6058 0.2556391
ILMN_2808939 5115.641 46 199.9964 0
ILMN_2634564 1138.958 47 77.50742 0
ILMN_2737647 239.9695 40 14.42374 0.5050125
ILMN_2734484 1724.667 35 109.237 0
ILMN_2952292 590.1523 49 26.32156 0
ILMN_2699078 235.8938 51 13.34152 0.5676692
ILMN_1213681 802.2529 51 48.75876 0
ILMN_2735413 1501.25 36 82.05441 0
ILMN_2735415 1865.389 35 121.701 0
ILMN_2891688 1488.122 34 86.88458 0
ILMN_2637698 2484.525 43 113.0932 0
ILMN_2674228 521.5157 50 32.63518 0
ILMN_2601546 300.8881 32 24.98397 0.0689223
ILMN_1230831 242.626 38 15.26715 0.4699248
ILMN_2848071 1309.281 39 89.17227 0

Total number of rows: 25697

Table truncated, full table size 1037 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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