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Sample GSM840510 Query DataSets for GSM840510
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT12_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT12
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-G
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6061.819 39 243.2503 0
ILMN_2721178 1617.823 46 79.65671 0
ILMN_3033922 3625.351 44 198.7666 0
ILMN_3092673 19817.44 57 768.6376 0
ILMN_2816356 272.9734 32 11.99186 0.1503759
ILMN_2808939 5187.605 49 228.9113 0
ILMN_2634564 1217.263 33 90.71044 0
ILMN_2737647 311.9318 28 23.84799 0.03759398
ILMN_2734484 1678.03 46 93.66238 0
ILMN_2952292 593.5644 57 26.72054 0
ILMN_2699078 242.4226 34 16.32377 0.4348371
ILMN_1213681 839.8644 59 46.20624 0
ILMN_2735413 1410.729 37 82.1915 0
ILMN_2735415 2303.893 44 109.0063 0
ILMN_2891688 1821.727 41 92.79996 0
ILMN_2637698 2419.597 50 141.28 0
ILMN_2674228 518.9688 40 38.59953 0
ILMN_2601546 271.8002 43 20.45536 0.1553885
ILMN_1230831 249.3562 41 16.69952 0.3458647
ILMN_2848071 1440.784 27 121.9078 0

Total number of rows: 25697

Table truncated, full table size 1036 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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