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Sample GSM840511 Query DataSets for GSM840511
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT12_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT12
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102040-H
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6430.511 49 289.7879 0
ILMN_2721178 1570.527 34 88.98202 0
ILMN_3033922 3908.642 51 161.3337 0
ILMN_3092673 22080.52 36 825.3419 0
ILMN_2816356 273.8448 34 20.92805 0.1766917
ILMN_2808939 4805.317 37 269.6491 0
ILMN_2634564 1012.93 28 79.14507 0
ILMN_2737647 311.5103 35 22.6588 0.04135338
ILMN_2734484 1632.025 45 83.2003 0
ILMN_2952292 576.2094 53 29.61838 0
ILMN_2699078 236.5002 36 14.9836 0.5626566
ILMN_1213681 858.9144 37 53.99219 0
ILMN_2735413 1363.007 41 68.93456 0
ILMN_2735415 2053.047 46 123.7741 0
ILMN_2891688 1599.214 37 98.78012 0
ILMN_2637698 2682.611 36 148.2569 0
ILMN_2674228 549.5479 45 34.22697 0
ILMN_2601546 261.4939 32 19.57606 0.2506266
ILMN_1230831 249.1036 36 15.2797 0.3997494
ILMN_2848071 1248.336 25 111.2222 0

Total number of rows: 25697

Table truncated, full table size 1031 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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