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Sample GSM840512 Query DataSets for GSM840512
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT16_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT16
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-A
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5736.155 43 237.5644 0
ILMN_2721178 1437.479 48 67.88314 0
ILMN_3033922 3319.345 34 190.3511 0
ILMN_3092673 19027.94 44 923.4972 0
ILMN_2816356 268.8559 34 20.29703 0.1716792
ILMN_2808939 3415.124 38 157.021 0
ILMN_2634564 1170.66 30 120.0105 0
ILMN_2737647 273.4019 30 14.45588 0.1541353
ILMN_2734484 1756.34 50 101.3473 0
ILMN_2952292 632.8292 50 32.0837 0
ILMN_2699078 246.8264 37 15.57857 0.3709273
ILMN_1213681 689.6606 47 42.75641 0
ILMN_2735413 1852.424 47 103.601 0
ILMN_2735415 2077.81 38 119.5032 0
ILMN_2891688 1590.271 35 118.3774 0
ILMN_2637698 2230.687 48 78.70413 0
ILMN_2674228 517.7982 46 33.8573 0
ILMN_2601546 306.3161 40 17.01983 0.05263158
ILMN_1230831 243.0539 24 14.17808 0.4260652
ILMN_2848071 1361.361 26 114.7331 0

Total number of rows: 25697

Table truncated, full table size 1043 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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