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Sample GSM840513 Query DataSets for GSM840513
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT16_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT16
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-B
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6099.813 40 304.6588 0
ILMN_2721178 1623.65 42 88.57218 0
ILMN_3033922 3667.569 45 143.1051 0
ILMN_3092673 17538.04 35 1187.604 0
ILMN_2816356 272.9457 36 18.73142 0.1528822
ILMN_2808939 3377.177 33 152.448 0
ILMN_2634564 1323.631 33 127.6661 0
ILMN_2737647 257.3701 26 17.98093 0.2807018
ILMN_2734484 1644.721 38 100.2956 0
ILMN_2952292 601.8085 45 34.67524 0
ILMN_2699078 239.2309 39 16.00076 0.5037594
ILMN_1213681 681.5438 43 46.39195 0
ILMN_2735413 1688.266 38 98.68233 0
ILMN_2735415 2340.817 44 158.0276 0
ILMN_2891688 1703.794 38 93.5076 0
ILMN_2637698 2125.71 35 120.1038 0
ILMN_2674228 521.8652 30 43.11541 0
ILMN_2601546 293.8798 27 17.86019 0.0689223
ILMN_1230831 233.3721 24 23.01925 0.5952381
ILMN_2848071 1390.848 20 142.4542 0

Total number of rows: 25697

Table truncated, full table size 1043 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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