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Sample GSM840514 Query DataSets for GSM840514
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT20_rep 1
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT20
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-C
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6125.738 43 239.4527 0
ILMN_2721178 1659.945 51 88.24273 0
ILMN_3033922 3878.987 55 210.0869 0
ILMN_3092673 20080.31 37 940.6797 0
ILMN_2816356 279.5364 27 28.1845 0.1290727
ILMN_2808939 4870.679 22 315.3309 0
ILMN_2634564 1523.54 34 147.5068 0
ILMN_2737647 282.7474 24 26.82965 0.1102757
ILMN_2734484 1798.278 47 100.8163 0
ILMN_2952292 524.5464 52 21.68124 0
ILMN_2699078 222.6416 36 14.88898 0.7719298
ILMN_1213681 760.5334 46 48.99826 0
ILMN_2735413 1611.871 32 117.4257 0
ILMN_2735415 1896.834 51 106.2092 0
ILMN_2891688 1536.767 35 111.8645 0
ILMN_2637698 2037.034 45 127.31 0
ILMN_2674228 588.5845 44 40.05387 0
ILMN_2601546 295.041 36 19.66832 0.07017544
ILMN_1230831 243.5991 32 14.04405 0.4223058
ILMN_2848071 1449.907 34 116.4667 0

Total number of rows: 25697

Table truncated, full table size 1042 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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