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Sample GSM840515 Query DataSets for GSM840515
Status Public on Mar 29, 2012
Title Reverb alpha/beta DKO liver_ZT20_rep 2
Sample type RNA
 
Source name Reverb alpha/beta DKO liver_ZT20
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre+
genotype/variation: Reverb alpha/beta DKO
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-D
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6240.951 38 302.5765 0
ILMN_2721178 1487.02 35 105.462 0
ILMN_3033922 3549.749 52 197.0433 0
ILMN_3092673 17078.4 46 850.9147 0
ILMN_2816356 260.894 29 22.92915 0.2243108
ILMN_2808939 4785.927 37 260.7142 0
ILMN_2634564 1028.202 44 83.8617 0
ILMN_2737647 263.5428 37 20.05455 0.2017544
ILMN_2734484 1828.251 46 109.6422 0
ILMN_2952292 501.7424 51 19.57856 0
ILMN_2699078 210.0493 47 14.0106 0.89599
ILMN_1213681 800.8653 49 33.7795 0
ILMN_2735413 1383.201 37 85.08107 0
ILMN_2735415 2043.923 44 120.9365 0
ILMN_2891688 1530.065 34 118.9623 0
ILMN_2637698 2252.24 54 123.7129 0
ILMN_2674228 547.2208 50 43.27365 0
ILMN_2601546 281.5219 41 16.19599 0.0989975
ILMN_1230831 257.7631 42 13.76264 0.2531328
ILMN_2848071 1597.077 28 174.3988 0

Total number of rows: 25697

Table truncated, full table size 1038 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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