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Sample GSM840516 Query DataSets for GSM840516
Status Public on Mar 29, 2012
Title wild-type liver_ZT0_rep 1
Sample type RNA
 
Source name wild-type liver_ZT0
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-E
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 7882.697 41 339.1956 0
ILMN_2721178 2253.301 47 105.5183 0
ILMN_3033922 4409.575 50 231.6783 0
ILMN_3092673 19728.82 40 1137.236 0
ILMN_2816356 283.7543 42 21.53421 0.1077694
ILMN_2808939 5186.141 44 278.5638 0
ILMN_2634564 1101.411 35 96.59374 0
ILMN_2737647 248.9154 31 17.10574 0.3533835
ILMN_2734484 2310.944 41 188.8797 0
ILMN_2952292 524.1458 45 37.14 0
ILMN_2699078 219.8805 52 11.23946 0.8245614
ILMN_1213681 871.948 47 45.38126 0
ILMN_2735413 2166.236 41 155.0715 0
ILMN_2735415 2691.136 35 199.0918 0
ILMN_2891688 1797.938 39 129.5382 0
ILMN_2637698 1814.143 44 87.36195 0
ILMN_2674228 681.5638 41 38.59656 0
ILMN_2601546 270.0439 38 15.82973 0.1817043
ILMN_1230831 258.9721 37 21.80551 0.2531328
ILMN_2848071 1628.79 32 117.6626 0

Total number of rows: 25697

Table truncated, full table size 1035 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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