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Sample GSM840517 Query DataSets for GSM840517
Status Public on Mar 29, 2012
Title wild-type liver_ZT0_rep 2
Sample type RNA
 
Source name wild-type liver_ZT0
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-F
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 7652.78 49 261.0737 0
ILMN_2721178 1909.108 44 90.73305 0
ILMN_3033922 5039.455 55 128.4791 0
ILMN_3092673 21278.97 35 959.1365 0
ILMN_2816356 273.5936 32 21.18299 0.1378446
ILMN_2808939 5471.834 43 230.8757 0
ILMN_2634564 1450.366 40 92.55255 0
ILMN_2737647 346.8026 27 24.18061 0.01754386
ILMN_2734484 2333.483 49 139.9279 0
ILMN_2952292 558.8135 55 25.56847 0
ILMN_2699078 223.124 43 13.83708 0.7744361
ILMN_1213681 877.9426 47 27.32517 0
ILMN_2735413 1919.963 43 116.2988 0
ILMN_2735415 2624.783 46 129.3494 0
ILMN_2891688 1994.677 41 136.9773 0
ILMN_2637698 2074.21 41 114.7059 0
ILMN_2674228 676.9668 38 39.54874 0
ILMN_2601546 310.5206 33 25.25889 0.05012531
ILMN_1230831 202.4296 31 9.95041 0.9448621
ILMN_2848071 1687.224 32 107.474 0

Total number of rows: 25697

Table truncated, full table size 1041 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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