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Sample GSM840518 Query DataSets for GSM840518
Status Public on Mar 29, 2012
Title wild-type liver_ZT4_rep 1
Sample type RNA
 
Source name wild-type liver_ZT4
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-G
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6146.749 44 306.1939 0
ILMN_2721178 1418.722 40 81.71766 0
ILMN_3033922 3954.97 54 148.1893 0
ILMN_3092673 20263.08 37 807.7218 0
ILMN_2816356 274.0421 36 18.68303 0.1578947
ILMN_2808939 5694.619 35 271.1669 0
ILMN_2634564 1235.172 47 118.7954 0
ILMN_2737647 269.8046 44 14.25152 0.1729323
ILMN_2734484 1947.396 45 105.8463 0
ILMN_2952292 545.0037 40 23.60367 0
ILMN_2699078 230.3985 40 15.03475 0.6541353
ILMN_1213681 891.6334 59 39.43346 0
ILMN_2735413 1420.814 37 107.7045 0
ILMN_2735415 2345.731 35 171.6835 0
ILMN_2891688 1559.509 39 98.58913 0
ILMN_2637698 2183.898 56 107.6387 0
ILMN_2674228 574.8684 41 38.60441 0
ILMN_2601546 275.9807 40 13.53935 0.1491228
ILMN_1230831 244.468 33 17.49143 0.4298246
ILMN_2848071 1414.483 41 97.98949 0

Total number of rows: 25697

Table truncated, full table size 1045 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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