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Sample GSM840519 Query DataSets for GSM840519
Status Public on Mar 29, 2012
Title wild-type liver_ZT4_rep 2
Sample type RNA
 
Source name wild-type liver_ZT4
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102043-H
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5681.559 49 257.8467 0
ILMN_2721178 1806.304 50 86.39638 0
ILMN_3033922 3717.229 58 158.468 0
ILMN_3092673 20808.05 59 949.0168 0
ILMN_2816356 337.2494 40 24.68896 0.01754386
ILMN_2808939 4830.452 34 323.8742 0
ILMN_2634564 1397.788 34 115.3588 0
ILMN_2737647 285.5769 36 13.8105 0.1015038
ILMN_2734484 2200.038 37 219.3936 0
ILMN_2952292 545.3867 45 30.6006 0
ILMN_2699078 246.8414 34 18.00177 0.4022556
ILMN_1213681 844.5095 59 40.84012 0
ILMN_2735413 1611.483 34 117.6183 0
ILMN_2735415 2359.225 44 152.6434 0
ILMN_2891688 1683.559 31 152.0894 0
ILMN_2637698 2344.858 35 130.7702 0
ILMN_2674228 597.864 47 37.28924 0
ILMN_2601546 290.5309 35 23.47998 0.0877193
ILMN_1230831 264.5765 32 22.84677 0.2230576
ILMN_2848071 1750.328 23 154.1115 0

Total number of rows: 25697

Table truncated, full table size 1042 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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