NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM840520 Query DataSets for GSM840520
Status Public on Mar 29, 2012
Title wild-type liver_ZT8_rep 1
Sample type RNA
 
Source name wild-type liver_ZT8
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-A
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5985.875 47 267.0083 0
ILMN_2721178 1590.747 44 84.46064 0
ILMN_3033922 3569.394 45 145.1347 0
ILMN_3092673 18800.27 38 739.7396 0
ILMN_2816356 279.4234 30 18.2507 0.08521304
ILMN_2808939 6733.382 37 371.4454 0
ILMN_2634564 1325.964 42 83.78371 0
ILMN_2737647 303.7008 37 21.6493 0.03132832
ILMN_2734484 1520.009 52 81.45587 0
ILMN_2952292 515.1234 45 29.32026 0
ILMN_2699078 230.1909 43 14.17656 0.6365915
ILMN_1213681 816.9427 51 43.45979 0
ILMN_2735413 1806.867 31 115.4068 0
ILMN_2735415 2349.837 39 115.5174 0
ILMN_2891688 1700.49 33 126.1894 0
ILMN_2637698 1819.779 39 123.9604 0
ILMN_2674228 584.5269 47 33.93829 0
ILMN_2601546 288.3792 32 20.5917 0.05764411
ILMN_1230831 268.0435 21 24.18379 0.1503759
ILMN_2848071 1500.638 31 145.7338 0

Total number of rows: 25697

Table truncated, full table size 1031 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap