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Sample GSM840521 Query DataSets for GSM840521
Status Public on Mar 29, 2012
Title wild-type liver_ZT8_rep 2
Sample type RNA
 
Source name wild-type liver_ZT8
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-B
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 6122.973 42 315.3954 0
ILMN_2721178 1555.126 39 88.14431 0
ILMN_3033922 3586.708 44 139.9909 0
ILMN_3092673 21336.67 35 763.7299 0
ILMN_2816356 296.6179 31 22.88288 0.04385965
ILMN_2808939 6205.271 43 207.9772 0
ILMN_2634564 1184.499 34 87.59163 0
ILMN_2737647 235.5717 42 14.67793 0.5401003
ILMN_2734484 1546.771 53 73.17148 0
ILMN_2952292 494.3101 44 27.78566 0
ILMN_2699078 242.2267 43 13.77055 0.4411027
ILMN_1213681 820.8548 47 50.73586 0
ILMN_2735413 1927.317 42 100.0735 0
ILMN_2735415 2452.727 45 145.573 0
ILMN_2891688 1942.73 32 113.7483 0
ILMN_2637698 2230.066 45 110.5617 0
ILMN_2674228 510.5028 47 29.7229 0
ILMN_2601546 261.1047 45 13.36831 0.2005012
ILMN_1230831 283.6236 40 18.53631 0.07393484
ILMN_2848071 1913.785 42 142.4307 0

Total number of rows: 25697

Table truncated, full table size 1028 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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