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Sample GSM840522 Query DataSets for GSM840522
Status Public on Mar 29, 2012
Title wild-type liver_ZT12_rep 1
Sample type RNA
 
Source name wild-type liver_ZT12
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-C
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5431.961 36 323.1943 0
ILMN_2721178 1454.296 31 85.29879 0
ILMN_3033922 3239.34 41 147.162 0
ILMN_3092673 16912.4 46 1134.676 0
ILMN_2816356 311.1909 36 24.04683 0.02380952
ILMN_2808939 5541.585 37 261.3287 0
ILMN_2634564 1024.911 19 97.79568 0
ILMN_2737647 294.9096 34 23.348 0.04636591
ILMN_2734484 1483.783 46 86.36859 0
ILMN_2952292 532.946 46 33.37077 0
ILMN_2699078 240.3617 47 14.79284 0.4348371
ILMN_1213681 731.8128 38 45.355 0
ILMN_2735413 1438.243 47 107.7462 0
ILMN_2735415 1881.195 39 97.93344 0
ILMN_2891688 1581.247 37 104.1588 0
ILMN_2637698 2018.161 23 126.2453 0
ILMN_2674228 533.1841 41 35.9357 0
ILMN_2601546 308.7443 39 25.55383 0.02756892
ILMN_1230831 258.6 41 17.63044 0.2343358
ILMN_2848071 1679.752 27 149.6784 0

Total number of rows: 25697

Table truncated, full table size 1027 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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