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Sample GSM840523 Query DataSets for GSM840523
Status Public on Mar 29, 2012
Title wild-type liver_ZT12_rep 2
Sample type RNA
 
Source name wild-type liver_ZT12
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-D
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5245.425 38 252.6441 0
ILMN_2721178 1409.179 29 97.49034 0
ILMN_3033922 3676.744 34 180.4688 0
ILMN_3092673 21801.75 49 786.1655 0
ILMN_2816356 319.1899 29 23.65299 0.02005013
ILMN_2808939 6127.942 34 442.9401 0
ILMN_2634564 1158.21 37 63.39427 0
ILMN_2737647 256.597 52 17.84443 0.2719298
ILMN_2734484 1487.527 55 76.09135 0
ILMN_2952292 523.783 55 21.73995 0
ILMN_2699078 217.9203 37 13.29631 0.8082707
ILMN_1213681 748.2283 45 48.3033 0
ILMN_2735413 1303.873 38 77.36977 0
ILMN_2735415 1926.51 41 105.5885 0
ILMN_2891688 1724.08 41 85.85973 0
ILMN_2637698 2211.605 46 131.2166 0
ILMN_2674228 510.0184 42 32.93032 0
ILMN_2601546 288.2481 44 17.68783 0.0726817
ILMN_1230831 322.426 25 38.05198 0.01629073
ILMN_2848071 1565.127 28 108.1086 0

Total number of rows: 25697

Table truncated, full table size 1028 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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