NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM840524 Query DataSets for GSM840524
Status Public on Mar 29, 2012
Title wild-type liver_ZT16_rep 1
Sample type RNA
 
Source name wild-type liver_ZT16
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-E
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5864.966 49 249.742 0
ILMN_2721178 1557.84 52 84.24247 0
ILMN_3033922 3796.733 47 202.4425 0
ILMN_3092673 20362.4 35 977.6441 0
ILMN_2816356 298.4519 25 35.92241 0.03634085
ILMN_2808939 5026.455 41 245.9624 0
ILMN_2634564 754.1774 37 57.47202 0
ILMN_2737647 239.3939 36 17.9851 0.4573935
ILMN_2734484 1528.662 41 96.06182 0
ILMN_2952292 529.1319 60 27.96311 0
ILMN_2699078 244.4902 48 14.5889 0.377193
ILMN_1213681 757.3445 41 51.52802 0
ILMN_2735413 1506.337 21 131.8618 0
ILMN_2735415 2283.572 34 149.9234 0
ILMN_2891688 1632.578 35 99.23534 0
ILMN_2637698 2267.429 45 118.9416 0
ILMN_2674228 443.9128 49 25.60834 0
ILMN_2601546 292.8117 35 23.52289 0.04511278
ILMN_1230831 239.3729 33 17.1721 0.4573935
ILMN_2848071 1459.617 34 123.617 0

Total number of rows: 25697

Table truncated, full table size 1037 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap