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Sample GSM840525 Query DataSets for GSM840525
Status Public on Mar 29, 2012
Title wild-type liver_ZT16_rep 2
Sample type RNA
 
Source name wild-type liver_ZT16
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-F
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5379.325 34 273.6011 0
ILMN_2721178 1460.656 34 86.4201 0
ILMN_3033922 4011.357 51 176.7744 0
ILMN_3092673 20929.86 56 806.3598 0
ILMN_2816356 331.0905 23 29.19132 0.005012531
ILMN_2808939 4749.533 33 334.7888 0
ILMN_2634564 1047.402 26 89.8792 0
ILMN_2737647 295.2669 21 33.06383 0.04511278
ILMN_2734484 1525.284 29 121.6258 0
ILMN_2952292 487.6938 38 26.86676 0
ILMN_2699078 223.6163 44 15.87971 0.7243108
ILMN_1213681 691.5064 47 28.23451 0
ILMN_2735413 1758.584 37 116.1194 0
ILMN_2735415 1960.95 31 133.5186 0
ILMN_2891688 1805.301 32 173.0895 0
ILMN_2637698 2164.768 50 106.1626 0
ILMN_2674228 445.4904 42 24.12014 0
ILMN_2601546 229.3208 46 12.91574 0.6190476
ILMN_1230831 224.4992 22 15.48004 0.7092732
ILMN_2848071 1752.463 37 118.7548 0

Total number of rows: 25697

Table truncated, full table size 1030 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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