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Sample GSM840526 Query DataSets for GSM840526
Status Public on Mar 29, 2012
Title wild-type liver_ZT20_rep 1
Sample type RNA
 
Source name wild-type liver_ZT20
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-G
technical replicate 1
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5276.091 54 198.9969 0
ILMN_2721178 1431.78 46 76.68386 0
ILMN_3033922 3522.186 45 130.9006 0
ILMN_3092673 17151.51 35 736.9353 0
ILMN_2816356 297.0299 36 21.67409 0.04135338
ILMN_2808939 4298.541 49 209.187 0
ILMN_2634564 1183.176 29 103.0441 0
ILMN_2737647 252.3568 34 14.86775 0.2969925
ILMN_2734484 2264.282 39 200.9984 0
ILMN_2952292 595.1681 47 33.83602 0
ILMN_2699078 225.6667 43 16.69706 0.7142857
ILMN_1213681 847.111 47 47.72011 0
ILMN_2735413 1687.896 38 102.3963 0
ILMN_2735415 2078.964 32 148.8434 0
ILMN_2891688 1706.484 32 98.40414 0
ILMN_2637698 2234.646 39 106.3739 0
ILMN_2674228 595.5164 44 40.99335 0
ILMN_2601546 260.8183 37 14.33768 0.2305764
ILMN_1230831 249.3883 34 13.23225 0.3333333
ILMN_2848071 2171.317 33 178.4098 0

Total number of rows: 25697

Table truncated, full table size 1027 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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