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Sample GSM840527 Query DataSets for GSM840527
Status Public on Mar 29, 2012
Title wild-type liver_ZT20_rep 2
Sample type RNA
 
Source name wild-type liver_ZT20
Organism Mus musculus
Characteristics background strain: c57Bl6/J
strain: Reverbalpha/beta Alb Cre-
genotype/variation: wild-type
gender: male
age: 20 week-old
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 6033102053-H
technical replicate 2
Data processing The data were normalized using cubic spline in Illumina GenomeStudio and also using the VAMPIRE Bayesian model with a 2-sided Bonferroni-corrected threshold of 0.05.
 
Submission date Nov 29, 2011
Last update date Mar 29, 2012
Contact name Ruth T Yu
Organization name Salk Institute
Department Gene Expression Lab
Lab Ronald Evans
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL6885
Series (2)
GSE34018 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function [Expression array]
GSE34020 Integral roles for Rev-erb alpha and Rev-erb beta in the circadian clock function

Data table header descriptions
ID_REF
VALUE Quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_2896528 5693.209 42 271.6504 0
ILMN_2721178 1465.724 44 79.28262 0
ILMN_3033922 3527.995 48 148.931 0
ILMN_3092673 19823.85 49 884.0879 0
ILMN_2816356 354.207 30 24.58998 0
ILMN_2808939 4265.485 36 237.3405 0
ILMN_2634564 1120.598 26 99.82932 0
ILMN_2737647 253.6597 31 18.21632 0.2719298
ILMN_2734484 2201.241 39 168.8681 0
ILMN_2952292 519.6589 44 32.08684 0
ILMN_2699078 208.2741 30 18.76415 0.9097744
ILMN_1213681 773.9471 46 52.0709 0
ILMN_2735413 1696.668 44 124.6639 0
ILMN_2735415 2064.35 33 101.0205 0
ILMN_2891688 1817.024 36 117.571 0
ILMN_2637698 2206.599 40 128.3366 0
ILMN_2674228 521.5934 40 31.19995 0
ILMN_2601546 261.4982 32 17.7772 0.2030075
ILMN_1230831 247.5852 24 16.0249 0.3496241
ILMN_2848071 1854.036 37 144.045 0

Total number of rows: 25697

Table truncated, full table size 1024 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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